Wall clock time and date at job start Mon Mar 30 2020 02:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.40973 * 127.24356 * 77.22928 * 3 2 1 5 5 N 1.31154 * 105.76697 * 179.97438 * 4 3 2 6 6 N 1.28513 * 109.06104 * 359.97438 * 5 4 3 7 7 C 1.46500 * 124.43868 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47087 * 89.97563 * 7 6 5 9 9 H 1.08000 * 119.99793 * 359.97438 * 8 7 6 10 10 C 1.37877 * 119.99814 * 180.02562 * 8 7 6 11 11 N 1.31510 * 120.00003 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99889 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47262 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47133 * 119.99773 * 12 10 8 15 15 H 1.48498 * 109.47340 * 239.99677 * 12 10 8 16 16 N 1.28592 * 111.12379 * 359.97438 * 6 5 4 17 17 H 1.08007 * 127.11436 * 0.25642 * 4 3 2 18 18 H 1.08996 * 109.47229 * 209.97479 * 7 6 5 19 19 H 1.09003 * 109.46839 * 329.97441 * 7 6 5 20 20 H 0.97002 * 119.99768 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.4212 -0.2470 -1.0945 5 7 4.6417 -0.1398 -0.6263 6 7 4.5874 0.1448 0.6257 7 6 5.7595 0.3409 1.4824 8 6 6.1603 1.7935 1.4606 9 1 5.5983 2.4998 0.8676 10 6 7.2450 2.2205 2.1969 11 7 7.9295 1.3602 2.9185 12 14 7.7422 4.0209 2.1693 13 1 6.8176 4.7763 1.2863 14 1 7.6752 4.5740 3.5458 15 1 9.1293 4.1435 1.6535 16 7 3.3693 0.2360 1.0279 17 1 3.1301 -0.4733 -2.1097 18 1 5.5168 0.0463 2.5033 19 1 6.5845 -0.2692 1.1145 20 1 8.6924 1.6607 3.4368 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108281808.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:06 Heat of formation + Delta-G solvation = 131.426676 kcal Electronic energy + Delta-G solvation = -9527.720264 eV Core-core repulsion = 7534.575757 eV Total energy + Delta-G solvation = -1993.144507 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 178.055 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.08670 -36.42703 -34.09629 -32.17355 -32.10305 -28.14730 -24.51791 -23.28090 -21.10917 -18.41547 -17.19678 -16.26954 -15.56715 -14.75938 -13.96610 -13.31999 -13.28518 -12.96542 -12.46649 -11.97539 -11.23440 -11.15324 -10.99074 -10.46735 -10.39737 -10.04654 -9.89595 -8.81140 -8.71993 -6.44476 -4.52856 1.74876 2.51335 2.65328 3.07058 3.13716 3.21926 3.28635 3.69422 4.01700 4.18617 4.90450 5.04036 5.29824 6.18315 6.27925 6.69056 6.76026 7.23703 7.49879 7.59485 7.61488 8.49960 8.79900 9.14297 10.64436 Molecular weight = 178.05amu Principal moments of inertia in cm(-1) A = 0.072803 B = 0.010098 C = 0.009673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.509855 B = 2772.037559 C = 2893.821941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C 0.322 3.678 3 C 0.016 3.984 4 C 0.005 3.995 5 N -0.278 5.278 6 N -0.085 5.085 7 C 0.258 3.742 8 C -0.545 4.545 9 H 0.069 0.931 10 C 0.070 3.930 11 N -0.887 5.887 12 Si 0.914 3.086 13 H -0.270 1.270 14 H -0.279 1.279 15 H -0.278 1.278 16 N -0.232 5.232 17 H 0.200 0.800 18 H 0.072 0.928 19 H 0.075 0.925 20 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.458 -1.786 -4.588 6.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.096 5.096 2 C 0.004 3.996 3 C -0.143 4.143 4 C -0.179 4.179 5 N -0.118 5.118 6 N 0.009 4.991 7 C 0.143 3.857 8 C -0.584 4.584 9 H 0.087 0.913 10 C -0.135 4.135 11 N -0.524 5.524 12 Si 0.740 3.260 13 H -0.195 1.195 14 H -0.204 1.204 15 H -0.204 1.204 16 N -0.081 5.081 17 H 0.217 0.783 18 H 0.090 0.910 19 H 0.092 0.908 20 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.888 -1.637 -3.650 5.579 hybrid contribution 0.099 0.830 -0.449 0.949 sum -3.790 -0.807 -4.099 5.641 Atomic orbital electron populations 1.81233 1.10931 1.09967 1.07462 1.23527 0.89935 0.92771 0.93361 1.17862 0.87727 1.15614 0.93109 1.24711 0.87119 1.05490 1.00619 1.74055 1.23817 1.17072 0.96882 1.49234 1.05513 1.39514 1.04841 1.20347 0.76787 1.00067 0.88547 1.21168 1.14762 0.91693 1.30770 0.91273 1.24895 0.95226 0.99161 0.94180 1.69907 1.19268 1.34743 1.28450 0.86177 0.78588 0.82993 0.78237 1.19456 1.20435 1.20414 1.74510 0.92233 1.15670 1.25709 0.78350 0.90977 0.90758 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.07 18.54 41.84 0.78 -6.29 14 2 C 0.32 5.25 15.95 -22.48 -0.36 4.89 14 3 C 0.02 0.28 7.09 -84.64 -0.60 -0.32 14 4 C 0.00 0.07 12.19 -16.81 -0.20 -0.13 14 5 N -0.28 -5.45 12.01 30.91 0.37 -5.07 14 6 N -0.08 -1.82 3.93 -11.66 -0.05 -1.86 14 7 C 0.26 6.06 6.28 -5.19 -0.03 6.03 14 8 C -0.55 -14.09 9.39 -34.44 -0.32 -14.42 14 9 H 0.07 1.83 7.81 -52.49 -0.41 1.42 14 10 C 0.07 1.81 5.46 -17.82 -0.10 1.71 14 11 N -0.89 -23.56 13.29 55.43 0.74 -22.82 14 12 Si 0.91 20.12 29.54 -169.99 -5.02 15.10 14 13 H -0.27 -5.97 7.11 56.52 0.40 -5.57 14 14 H -0.28 -6.07 7.11 56.52 0.40 -5.67 14 15 H -0.28 -6.03 7.11 56.52 0.40 -5.63 14 16 N -0.23 -4.78 12.10 32.40 0.39 -4.39 14 17 H 0.20 2.14 8.06 -52.48 -0.42 1.72 14 18 H 0.07 1.72 8.14 -51.93 -0.42 1.30 14 19 H 0.07 1.76 8.14 -51.93 -0.42 1.34 14 20 H 0.27 6.77 8.31 -40.82 -0.34 6.43 14 LS Contribution 207.52 15.07 3.13 3.13 Total: -1.00 -27.01 207.52 -2.09 -29.11 By element: Atomic # 1 Polarization: -3.84 SS G_CDS: -0.81 Total: -4.65 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -1.62 Total: -2.24 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: 2.23 Total: -40.44 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 3.13 Total: 3.13 kcal Total: -27.01 -2.09 -29.11 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108281808.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.534 kcal (2) G-P(sol) polarization free energy of solvation -27.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds