Wall clock time and date at job start Mon Mar 30 2020 02:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38561 * 119.77979 * 2 1 4 4 C 1.37624 * 120.30743 * 180.26006 * 3 2 1 5 5 C 1.40772 * 119.85178 * 359.46633 * 4 3 2 6 6 C 1.41403 * 120.21696 * 180.25972 * 5 4 3 7 7 H 1.07999 * 120.00176 * 204.44580 * 6 5 4 8 8 C 1.39934 * 120.00165 * 24.43975 * 6 5 4 9 9 N 1.30832 * 119.99935 * 17.87489 * 8 6 5 10 10 Si 1.86800 * 120.00018 * 197.88288 * 8 6 5 11 11 H 1.48494 * 109.47317 * 59.99871 * 10 8 6 12 12 H 1.48507 * 109.46916 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46802 * 299.99433 * 10 8 6 14 14 C 1.40602 * 119.56462 * 0.27236 * 5 4 3 15 15 C 1.38132 * 119.69811 * 0.02562 * 14 5 4 16 16 O 1.35906 * 119.93485 * 179.97438 * 15 14 5 17 17 H 1.08994 * 109.47035 * 270.25767 * 1 2 3 18 18 H 1.09003 * 109.46994 * 30.25388 * 1 2 3 19 19 H 1.08992 * 109.46972 * 150.25288 * 1 2 3 20 20 H 1.08005 * 119.84798 * 0.02562 * 3 2 1 21 21 H 1.08000 * 120.07363 * 179.74210 * 4 3 2 22 22 H 0.96997 * 120.00046 * 180.02562 * 9 8 6 23 23 H 1.08004 * 120.15068 * 179.97438 * 14 5 4 24 24 H 0.96706 * 113.99518 * 89.99591 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1953 1.2026 0.0000 4 6 3.5714 1.2153 -0.0054 5 6 4.2834 0.0009 0.0004 6 6 5.6974 0.0049 0.0005 7 1 6.2399 -0.8468 -0.3825 8 6 6.3939 1.1126 0.4966 9 7 5.7846 1.9773 1.2666 10 14 8.1936 1.3567 0.0595 11 1 8.3333 1.4757 -1.4141 12 1 8.6962 2.5958 0.7056 13 1 8.9817 0.1931 0.5392 14 6 3.5792 -1.2161 0.0059 15 6 2.1979 -1.2075 0.0050 16 8 1.5124 -2.3810 0.0098 17 1 -0.3633 0.0046 1.0276 18 1 -0.3633 0.8877 -0.5178 19 1 -0.3633 -0.8922 -0.5099 20 1 1.6492 2.1344 0.0004 21 1 4.1040 2.1549 -0.0096 22 1 6.2673 2.7452 1.6102 23 1 4.1159 -2.1533 0.0100 24 1 1.3136 -2.7167 0.8946 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000115624756.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:03 Heat of formation + Delta-G solvation = -41.232814 kcal Electronic energy + Delta-G solvation = -10050.741366 eV Core-core repulsion = 8121.357374 eV Total energy + Delta-G solvation = -1929.383992 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.073 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.32162 -35.70104 -33.57811 -31.12734 -28.38857 -27.26618 -23.76875 -21.06536 -20.09938 -17.95862 -16.05615 -15.32464 -14.34964 -14.16177 -13.88989 -12.90451 -12.51581 -12.18266 -11.60518 -11.51789 -11.36183 -11.04924 -10.68936 -10.30379 -10.15991 -9.80774 -9.22321 -9.03606 -7.45437 -7.16858 -6.79681 -4.38734 2.71804 2.87748 3.04830 3.07413 3.17799 3.90469 4.52111 5.25654 5.67091 6.06246 6.19479 6.38414 6.41592 6.62790 6.93471 7.02159 7.18536 7.29421 7.37075 7.77677 7.93063 8.03479 8.14352 8.47407 8.70463 8.85434 8.98051 10.14792 Molecular weight = 178.07amu Principal moments of inertia in cm(-1) A = 0.078097 B = 0.012214 C = 0.010892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.443367 B = 2291.814574 C = 2570.189954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.238 4.238 3 C -0.090 4.090 4 C -0.168 4.168 5 C 0.117 3.883 6 C -0.462 4.462 7 H 0.078 0.922 8 C 0.076 3.924 9 N -0.793 5.793 10 Si 0.910 3.090 11 H -0.263 1.263 12 H -0.278 1.278 13 H -0.265 1.265 14 C -0.245 4.245 15 C 0.118 3.882 16 O -0.512 6.512 17 H 0.040 0.960 18 H 0.044 0.956 19 H 0.051 0.949 20 H 0.092 0.908 21 H 0.120 0.880 22 H 0.282 0.718 23 H 0.098 0.902 24 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.106 -0.711 0.085 2.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.240 4.240 3 C -0.109 4.109 4 C -0.187 4.187 5 C 0.114 3.886 6 C -0.491 4.491 7 H 0.096 0.904 8 C -0.142 4.142 9 N -0.418 5.418 10 Si 0.734 3.266 11 H -0.188 1.188 12 H -0.203 1.203 13 H -0.190 1.190 14 C -0.265 4.265 15 C 0.074 3.926 16 O -0.320 6.320 17 H 0.059 0.941 18 H 0.063 0.937 19 H 0.070 0.930 20 H 0.110 0.890 21 H 0.138 0.862 22 H 0.093 0.907 23 H 0.116 0.884 24 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -2.021 -0.430 -0.389 2.102 hybrid contribution 0.821 0.121 0.472 0.955 sum -1.200 -0.309 0.083 1.242 Atomic orbital electron populations 1.20302 0.93418 1.00587 0.99646 1.19433 0.94359 0.92731 1.17457 1.20475 0.94584 0.95071 1.00769 1.21361 0.92267 0.98863 1.06236 1.17474 0.93282 0.90322 0.87473 1.19551 0.91325 1.01927 1.36313 0.90364 1.25919 1.00969 0.94787 0.92479 1.69820 1.38807 1.10809 1.22346 0.86341 0.81757 0.78454 0.80030 1.18761 1.20296 1.18964 1.21227 0.92171 0.97796 1.15330 1.18061 0.89659 0.83361 1.01471 1.84722 1.76954 1.38256 1.32099 0.94095 0.93652 0.92960 0.89007 0.86204 0.90739 0.88418 0.77685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.56 9.78 36.01 0.35 -1.21 14 2 C -0.24 -5.51 5.92 -104.17 -0.62 -6.13 14 3 C -0.09 -2.17 9.66 -39.69 -0.38 -2.56 14 4 C -0.17 -4.44 8.70 -38.85 -0.34 -4.77 14 5 C 0.12 3.19 5.57 -106.84 -0.60 2.60 14 6 C -0.46 -12.39 9.05 -37.74 -0.34 -12.73 14 7 H 0.08 2.02 7.91 -52.49 -0.41 1.60 14 8 C 0.08 1.92 5.14 -17.34 -0.09 1.83 14 9 N -0.79 -20.45 10.95 55.55 0.61 -19.84 14 10 Si 0.91 18.63 29.60 -169.99 -5.03 13.60 14 11 H -0.26 -5.36 7.11 56.52 0.40 -4.96 14 12 H -0.28 -5.51 7.11 56.52 0.40 -5.11 14 13 H -0.27 -5.35 7.11 56.52 0.40 -4.95 14 14 C -0.25 -6.30 9.73 -38.73 -0.38 -6.68 14 15 C 0.12 2.81 6.66 -39.29 -0.26 2.55 14 16 O -0.51 -10.54 12.52 -19.44 -0.24 -10.78 14 17 H 0.04 0.70 8.14 -51.93 -0.42 0.28 14 18 H 0.04 0.78 8.08 -51.93 -0.42 0.36 14 19 H 0.05 0.95 7.51 -51.93 -0.39 0.56 14 20 H 0.09 1.97 8.06 -52.48 -0.42 1.54 14 21 H 0.12 3.22 6.15 -52.49 -0.32 2.90 14 22 H 0.28 6.60 8.30 -40.82 -0.34 6.26 14 23 H 0.10 2.40 8.06 -52.48 -0.42 1.98 14 24 H 0.37 5.80 9.06 45.56 0.41 6.22 14 LS Contribution 215.87 15.07 3.25 3.25 Total: -1.00 -28.59 215.87 -5.60 -34.19 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -1.54 Total: 6.68 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: -2.65 Total: -27.10 kcal Atomic # 7 Polarization: -20.45 SS G_CDS: 0.61 Total: -19.84 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: -0.24 Total: -10.78 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -28.59 -5.60 -34.19 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115624756.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.045 kcal (2) G-P(sol) polarization free energy of solvation -28.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds