Wall clock time and date at job start Mon Mar 30 2020 02:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30524 * 1 3 3 Si 1.86801 * 119.99645 * 2 1 4 4 H 1.48496 * 109.47077 * 274.98191 * 3 2 1 5 5 H 1.48498 * 109.47536 * 34.98915 * 3 2 1 6 6 H 1.48502 * 109.46982 * 154.98418 * 3 2 1 7 7 C 1.40451 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99972 * 173.77369 * 7 2 1 9 9 C 1.41027 * 120.00167 * 354.04495 * 7 2 1 10 10 O 1.21429 * 120.00189 * 5.94930 * 9 7 2 11 11 C 1.50704 * 119.99768 * 185.95544 * 9 7 2 12 12 H 1.08996 * 115.55127 * 355.67035 * 11 9 7 13 13 C 1.53001 * 117.49622 * 209.99758 * 11 9 7 14 14 C 1.52998 * 60.00081 * 252.51292 * 13 11 9 15 15 F 1.39900 * 117.49817 * 252.51581 * 14 13 11 16 16 F 1.39900 * 117.50184 * 107.48897 * 14 13 11 17 17 H 0.97001 * 119.99900 * 359.97438 * 1 2 3 18 18 H 1.08999 * 117.50016 * 359.97438 * 13 11 9 19 19 H 1.08997 * 117.50068 * 144.99716 * 13 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2391 1.6178 0.0000 4 1 2.3813 2.1073 -1.3948 5 1 1.4933 2.6200 0.8028 6 1 3.5854 1.4122 0.5921 7 6 2.0075 -1.2164 -0.0005 8 1 3.0827 -1.2191 -0.1020 9 6 1.3080 -2.4344 0.1256 10 8 0.0938 -2.4401 0.1260 11 6 2.0677 -3.7291 0.2601 12 1 3.1516 -3.6489 0.1774 13 6 1.4088 -4.9952 -0.2909 14 6 1.5078 -4.7802 1.2206 15 9 2.4263 -5.5650 1.9260 16 9 0.3299 -4.4658 1.9069 17 1 -0.4850 0.8401 0.0004 18 1 0.4258 -4.8919 -0.7503 19 1 2.0592 -5.7481 -0.7362 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116612852.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:30 Heat of formation + Delta-G solvation = -116.212340 kcal Electronic energy + Delta-G solvation = -10228.251679 eV Core-core repulsion = 7768.698280 eV Total energy + Delta-G solvation = -2459.553400 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 176.039 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -47.90863 -46.54487 -37.36066 -34.26591 -32.57979 -27.39760 -23.23133 -21.79537 -19.22814 -17.44342 -16.14685 -15.85440 -15.23031 -14.86292 -13.69827 -13.26708 -13.09172 -12.81762 -12.58881 -12.03748 -11.64831 -11.40007 -11.10051 -10.46740 -10.36642 -10.02464 -9.22466 -8.94913 -7.54045 -6.36296 -4.98678 3.00202 3.11023 3.15314 3.57654 3.73858 3.97832 4.46055 5.07782 5.16952 5.32754 5.82314 5.97010 6.32941 6.49682 6.58693 7.18163 7.99777 8.71911 8.76456 10.24111 10.45996 Molecular weight = 176.04amu Principal moments of inertia in cm(-1) A = 0.079344 B = 0.013305 C = 0.012580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.810664 B = 2103.967201 C = 2225.154056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.734 5.734 2 C 0.080 3.920 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.522 4.522 8 H 0.073 0.927 9 C 0.381 3.619 10 O -0.530 6.530 11 C -0.178 4.178 12 H 0.120 0.880 13 C -0.166 4.166 14 C 0.194 3.806 15 F -0.176 7.176 16 F -0.151 7.151 17 H 0.275 0.725 18 H 0.120 0.880 19 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.428 -3.554 -0.279 5.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.553 4.553 8 H 0.091 0.909 9 C 0.275 3.725 10 O -0.418 6.418 11 C -0.199 4.199 12 H 0.138 0.862 13 C -0.203 4.203 14 C 0.157 3.843 15 F -0.157 7.157 16 F -0.132 7.132 17 H 0.086 0.914 18 H 0.139 0.861 19 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.648 -3.531 -0.225 5.082 hybrid contribution 0.664 0.589 0.254 0.924 sum 4.313 -2.942 0.030 5.221 Atomic orbital electron populations 1.69953 1.07601 1.28273 1.30425 1.26035 0.94657 1.01123 0.92572 0.86302 0.80561 0.80744 0.79018 1.19435 1.20046 1.18426 1.20704 0.95385 0.91554 1.47642 0.90903 1.18695 0.88542 0.85573 0.79691 1.90447 1.14981 1.87225 1.49143 1.24773 1.02517 0.95210 0.97390 0.86190 1.24102 1.04963 0.99836 0.91450 1.19855 0.80077 0.99408 0.84935 1.92943 1.65728 1.75613 1.81407 1.93035 1.45773 1.92930 1.81442 0.91377 0.86130 0.87263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -21.07 11.75 55.57 0.65 -20.42 13 2 C 0.08 2.14 5.50 -17.27 -0.09 2.05 13 3 Si 0.91 19.16 29.57 -169.99 -5.03 14.13 13 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 13 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 13 6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 13 7 C -0.52 -14.31 9.22 -37.69 -0.35 -14.66 13 8 H 0.07 1.82 7.86 -52.49 -0.41 1.40 13 9 C 0.38 10.63 6.53 -33.25 -0.22 10.42 13 10 O -0.53 -16.65 14.23 5.43 0.08 -16.57 13 11 C -0.18 -3.98 6.05 -91.77 -0.55 -4.53 13 12 H 0.12 2.35 8.14 -51.93 -0.42 1.93 13 13 C -0.17 -3.14 10.03 -26.73 -0.27 -3.41 13 14 C 0.19 4.17 5.16 -26.73 -0.14 4.03 13 15 F -0.18 -3.48 17.60 2.25 0.04 -3.44 13 16 F -0.15 -3.70 16.43 2.25 0.04 -3.66 13 17 H 0.28 7.05 8.29 -40.82 -0.34 6.72 13 18 H 0.12 2.39 7.97 -51.93 -0.41 1.98 13 19 H 0.11 1.63 8.14 -51.93 -0.42 1.21 13 LS Contribution 193.77 15.07 2.92 2.92 Total: -1.00 -31.48 193.77 -3.73 -35.20 By element: Atomic # 1 Polarization: -1.25 SS G_CDS: -0.81 Total: -2.06 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -1.62 Total: -6.10 kcal Atomic # 7 Polarization: -21.07 SS G_CDS: 0.65 Total: -20.42 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: 0.08 Total: -16.57 kcal Atomic # 9 Polarization: -7.18 SS G_CDS: 0.08 Total: -7.10 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 2.92 Total: 2.92 kcal Total: -31.48 -3.73 -35.20 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116612852.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.010 kcal (2) G-P(sol) polarization free energy of solvation -31.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds