Wall clock time and date at job start Mon Mar 30 2020 02:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37672 * 120.07425 * 2 1 4 4 C 1.38522 * 120.30292 * 180.25013 * 3 2 1 5 5 C 1.39156 * 120.44347 * 359.44519 * 4 3 2 6 6 O 1.35905 * 119.93273 * 180.27209 * 5 4 3 7 7 C 1.38094 * 120.13964 * 0.25206 * 5 4 3 8 8 C 1.40641 * 119.69279 * 0.02562 * 7 5 4 9 9 C 1.41404 * 120.22030 * 180.02562 * 8 7 5 10 10 H 1.07995 * 120.00304 * 153.74989 * 9 8 7 11 11 C 1.39925 * 119.99513 * 333.75366 * 9 8 7 12 12 N 1.30832 * 120.00595 * 343.92565 * 11 9 8 13 13 Si 1.86805 * 119.99874 * 163.92797 * 11 9 8 14 14 H 1.48499 * 109.46903 * 89.99805 * 13 11 9 15 15 H 1.48501 * 109.47101 * 209.99491 * 13 11 9 16 16 H 1.48502 * 109.47027 * 329.99818 * 13 11 9 17 17 H 1.09000 * 109.47381 * 270.32113 * 1 2 3 18 18 H 1.09001 * 109.46927 * 30.32672 * 1 2 3 19 19 H 1.08999 * 109.46885 * 150.31796 * 1 2 3 20 20 H 1.07996 * 119.84599 * 359.97438 * 3 2 1 21 21 H 1.07998 * 119.77705 * 179.71695 * 4 3 2 22 22 H 0.96704 * 113.99896 * 89.99780 * 6 5 4 23 23 H 1.07997 * 120.15678 * 179.97438 * 7 5 4 24 24 H 0.97000 * 120.00506 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1914 0.0000 4 6 3.5821 1.1969 -0.0052 5 6 4.2920 0.0001 0.0011 6 8 5.6509 0.0177 0.0015 7 6 3.6186 -1.2055 0.0074 8 6 2.2122 -1.2179 0.0069 9 6 1.5113 -2.4460 0.0138 10 1 0.5149 -2.4968 0.4273 11 6 2.1088 -3.5955 -0.5151 12 7 3.1592 -3.4904 -1.2879 13 14 1.4066 -5.2803 -0.1177 14 1 0.3869 -5.6438 -1.1342 15 1 2.4982 -6.2870 -0.1297 16 1 0.7763 -5.2494 1.2266 17 1 -0.3634 0.0058 1.0276 18 1 -0.3633 0.8871 -0.5189 19 1 -0.3633 -0.8928 -0.5089 20 1 1.6556 2.1259 -0.0004 21 1 4.1147 2.1364 -0.0098 22 1 6.0439 0.0273 0.8850 23 1 4.1692 -2.1345 0.0119 24 1 3.5732 -4.2872 -1.6548 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000140703856.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:53 Heat of formation + Delta-G solvation = -40.289324 kcal Electronic energy + Delta-G solvation = -10153.920532 eV Core-core repulsion = 8224.577453 eV Total energy + Delta-G solvation = -1929.343079 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.073 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.18824 -35.86845 -33.53391 -30.49698 -29.50489 -25.91084 -24.50296 -21.12072 -19.85558 -17.74436 -16.29505 -15.08922 -14.35434 -14.17771 -13.72524 -12.81868 -12.49745 -12.26572 -11.69850 -11.49351 -11.12518 -10.88927 -10.60637 -10.32389 -10.13687 -9.68587 -9.20381 -9.06086 -7.42911 -7.11760 -6.73264 -4.39184 2.70405 2.89495 3.06306 3.09978 3.19342 3.91781 4.54933 5.30190 5.65360 6.17128 6.38915 6.48934 6.59925 6.66940 6.91836 7.09326 7.20140 7.35275 7.43375 7.81928 7.97663 8.00935 8.15442 8.43459 8.78917 8.86779 9.01225 10.18342 Molecular weight = 178.07amu Principal moments of inertia in cm(-1) A = 0.044474 B = 0.016658 C = 0.012573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.427564 B = 1680.436711 C = 2226.498569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.203 4.203 3 C -0.082 4.082 4 C -0.263 4.263 5 C 0.100 3.900 6 O -0.512 6.512 7 C -0.182 4.182 8 C 0.121 3.879 9 C -0.459 4.459 10 H 0.082 0.918 11 C 0.074 3.926 12 N -0.790 5.790 13 Si 0.908 3.092 14 H -0.269 1.269 15 H -0.276 1.276 16 H -0.260 1.260 17 H 0.041 0.959 18 H 0.038 0.962 19 H 0.061 0.939 20 H 0.092 0.908 21 H 0.092 0.908 22 H 0.368 0.632 23 H 0.124 0.876 24 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.187 0.801 2.985 3.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.205 4.205 3 C -0.100 4.100 4 C -0.282 4.282 5 C 0.057 3.943 6 O -0.320 6.320 7 C -0.202 4.202 8 C 0.118 3.882 9 C -0.488 4.488 10 H 0.100 0.900 11 C -0.144 4.144 12 N -0.415 5.415 13 Si 0.732 3.268 14 H -0.195 1.195 15 H -0.201 1.201 16 H -0.184 1.184 17 H 0.060 0.940 18 H 0.057 0.943 19 H 0.080 0.920 20 H 0.110 0.890 21 H 0.110 0.890 22 H 0.221 0.779 23 H 0.142 0.858 24 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.104 0.645 2.208 2.552 hybrid contribution -0.052 -0.739 0.535 0.914 sum -1.156 -0.094 2.743 2.979 Atomic orbital electron populations 1.20392 0.93414 1.00635 0.99618 1.19806 0.94535 0.92970 1.13176 1.20274 0.93201 0.96068 1.00483 1.20571 0.94052 0.95811 1.17807 1.18421 0.80902 0.93076 1.01912 1.84792 1.18395 1.96907 1.31940 1.21560 0.94802 0.96099 1.07701 1.17335 0.91089 0.91882 0.87850 1.19560 1.02040 0.92276 1.34963 0.90012 1.25956 0.94242 1.01477 0.92728 1.69836 1.18112 1.31751 1.21847 0.86322 0.79400 0.80917 0.80155 1.19460 1.20109 1.18433 0.94027 0.94339 0.91978 0.89012 0.89010 0.77929 0.85848 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.75 9.40 36.00 0.34 -1.41 14 2 C -0.20 -5.00 5.94 -103.89 -0.62 -5.62 14 3 C -0.08 -1.90 9.67 -39.68 -0.38 -2.29 14 4 C -0.26 -6.22 9.99 -39.14 -0.39 -6.62 14 5 C 0.10 2.51 6.69 -39.29 -0.26 2.25 14 6 O -0.51 -11.39 13.50 -19.44 -0.26 -11.65 14 7 C -0.18 -4.91 8.62 -38.73 -0.33 -5.24 14 8 C 0.12 3.26 5.56 -106.84 -0.59 2.67 14 9 C -0.46 -12.08 8.11 -37.75 -0.31 -12.39 14 10 H 0.08 2.04 6.89 -52.49 -0.36 1.68 14 11 C 0.07 1.87 5.16 -17.35 -0.09 1.78 14 12 N -0.79 -20.88 10.97 55.55 0.61 -20.27 14 13 Si 0.91 18.61 29.59 -169.99 -5.03 13.58 14 14 H -0.27 -5.44 7.11 56.52 0.40 -5.04 14 15 H -0.28 -5.55 7.11 56.52 0.40 -5.15 14 16 H -0.26 -5.26 7.11 56.52 0.40 -4.86 14 17 H 0.04 0.80 8.14 -51.93 -0.42 0.37 14 18 H 0.04 0.71 8.09 -51.93 -0.42 0.29 14 19 H 0.06 1.32 6.78 -51.93 -0.35 0.96 14 20 H 0.09 1.85 8.06 -52.49 -0.42 1.43 14 21 H 0.09 1.97 8.06 -52.49 -0.42 1.55 14 22 H 0.37 6.10 9.06 45.56 0.41 6.51 14 23 H 0.12 3.45 6.22 -52.49 -0.33 3.13 14 24 H 0.28 6.77 8.30 -40.82 -0.34 6.43 14 LS Contribution 214.11 15.07 3.23 3.23 Total: -1.00 -29.15 214.11 -5.55 -34.69 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -1.45 Total: 7.29 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: -2.64 Total: -26.87 kcal Atomic # 7 Polarization: -20.88 SS G_CDS: 0.61 Total: -20.27 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.26 Total: -11.65 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 3.23 Total: 3.23 kcal Total: -29.15 -5.55 -34.69 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000140703856.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.598 kcal (2) G-P(sol) polarization free energy of solvation -29.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds