Wall clock time and date at job start Mon Mar 30 2020 02:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38135 * 120.15006 * 2 1 4 4 O 1.35908 * 119.93376 * 0.02871 * 3 2 1 5 5 C 1.39114 * 120.13408 * 180.02562 * 3 2 1 6 6 C 1.38562 * 120.44301 * 359.96298 * 5 3 2 7 7 C 1.37618 * 120.31039 * 0.03688 * 6 5 3 8 8 C 1.40605 * 120.15386 * 180.02562 * 2 1 3 9 9 C 1.41399 * 120.21822 * 359.69956 * 8 2 1 10 10 H 1.08001 * 119.99900 * 333.98715 * 9 8 2 11 11 C 1.39932 * 120.00038 * 153.98954 * 9 8 2 12 12 N 1.30826 * 120.00162 * 343.68929 * 11 9 8 13 13 Si 1.86802 * 120.00095 * 163.69379 * 11 9 8 14 14 H 1.48500 * 109.46972 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47043 * 119.99837 * 13 11 9 16 16 H 1.48501 * 109.47266 * 240.00000 * 13 11 9 17 17 H 1.08997 * 109.46710 * 269.97124 * 1 2 3 18 18 H 1.08998 * 109.47420 * 29.96971 * 1 2 3 19 19 H 1.09005 * 109.47161 * 149.97409 * 1 2 3 20 20 H 0.96696 * 114.00151 * 89.99867 * 4 3 2 21 21 H 1.07998 * 119.77743 * 179.97438 * 5 3 2 22 22 H 1.08000 * 119.84833 * 180.02562 * 6 5 3 23 23 H 1.07997 * 120.08033 * 180.02562 * 7 6 5 24 24 H 0.96995 * 119.99895 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2008 1.1945 0.0000 4 8 1.5230 2.3725 0.0006 5 6 3.5920 1.1941 -0.0005 6 6 4.2937 -0.0007 -0.0003 7 6 3.6210 -1.2013 -0.0003 8 6 2.2133 -1.2158 -0.0005 9 6 1.5143 -2.4449 0.0053 10 1 0.5186 -2.4978 0.4202 11 6 2.1127 -3.5927 -0.5263 12 7 3.1591 -3.4844 -1.3042 13 14 1.4175 -5.2795 -0.1256 14 1 0.2414 -5.1304 0.7688 15 1 1.0026 -5.9550 -1.3813 16 1 2.4561 -6.0941 0.5549 17 1 -0.3633 -0.0005 1.0277 18 1 -0.3634 0.8902 -0.5133 19 1 -0.3634 -0.8898 -0.5143 20 1 1.3272 2.7131 0.8841 21 1 4.1286 2.1313 -0.0010 22 1 5.3736 0.0102 -0.0003 23 1 4.1717 -2.1303 0.0003 24 1 3.5740 -4.2800 -1.6723 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000140715434.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:05 Heat of formation + Delta-G solvation = -58.208554 kcal Electronic energy + Delta-G solvation = -10185.492399 eV Core-core repulsion = 8255.372283 eV Total energy + Delta-G solvation = -1930.120116 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.15477 -37.50215 -35.18341 -33.22033 -30.54557 -27.83510 -26.65096 -22.87964 -21.65426 -19.65435 -17.93936 -17.16291 -16.25824 -16.04156 -15.61348 -14.69177 -14.00170 -13.86475 -13.32633 -13.24339 -12.99784 -12.69561 -12.38244 -12.02916 -11.91990 -11.65814 -11.06662 -10.83575 -9.28930 -9.02398 -8.63884 -6.36474 0.91205 0.94770 1.39670 1.50026 1.54921 2.21243 2.68103 3.57547 3.73716 4.45448 4.52859 4.71944 4.94512 4.99277 5.11814 5.24620 5.27667 5.45423 5.69961 5.96592 6.03204 6.08764 6.27347 6.60838 6.88903 6.94139 7.21965 8.33699 Molecular weight = 178.07amu Principal moments of inertia in cm(-1) A = 0.060913 B = 0.014620 C = 0.012196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.560729 B = 1914.782511 C = 2295.248289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.241 4.241 3 C 0.115 3.885 4 O -0.510 6.510 5 C -0.265 4.265 6 C -0.101 4.101 7 C -0.195 4.195 8 C 0.090 3.910 9 C -0.488 4.488 10 H 0.083 0.917 11 C 0.033 3.967 12 N -0.827 5.827 13 Si 0.984 3.016 14 H -0.256 1.256 15 H -0.267 1.267 16 H -0.265 1.265 17 H 0.057 0.943 18 H 0.056 0.944 19 H 0.050 0.950 20 H 0.396 0.604 21 H 0.117 0.883 22 H 0.116 0.884 23 H 0.104 0.896 24 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.997 1.279 3.398 4.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.243 4.243 3 C 0.072 3.928 4 O -0.322 6.322 5 C -0.284 4.284 6 C -0.119 4.119 7 C -0.214 4.214 8 C 0.088 3.912 9 C -0.517 4.517 10 H 0.101 0.899 11 C -0.181 4.181 12 N -0.454 5.454 13 Si 0.804 3.196 14 H -0.179 1.179 15 H -0.192 1.192 16 H -0.189 1.189 17 H 0.075 0.925 18 H 0.075 0.925 19 H 0.069 0.931 20 H 0.252 0.748 21 H 0.135 0.865 22 H 0.134 0.866 23 H 0.122 0.878 24 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.811 1.095 2.639 3.382 hybrid contribution 0.047 -0.615 0.412 0.742 sum -1.764 0.480 3.051 3.556 Atomic orbital electron populations 1.20228 0.91203 1.00946 1.00640 1.20432 0.96711 0.92340 1.14838 1.18165 0.89914 0.84175 1.00592 1.84649 1.76868 1.36328 1.34321 1.20918 0.93173 0.97711 1.16630 1.20832 0.98840 0.92407 0.99843 1.21359 0.94855 0.96870 1.08330 1.17777 0.92348 0.92578 0.88547 1.19842 1.02640 0.93199 1.36053 0.89934 1.26809 0.94365 1.05122 0.91831 1.69887 1.19639 1.33184 1.22643 0.85134 0.79354 0.75926 0.79155 1.17912 1.19223 1.18936 0.92473 0.92461 0.93133 0.74766 0.86490 0.86590 0.87813 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -3.12 9.17 71.24 0.65 -2.47 14 2 C -0.24 -12.01 5.95 -19.31 -0.11 -12.12 14 3 C 0.12 5.33 6.67 22.46 0.15 5.48 14 4 O -0.51 -19.65 12.53 -92.51 -1.16 -20.81 14 5 C -0.26 -12.03 9.99 22.56 0.23 -11.80 14 6 C -0.10 -4.80 10.02 22.20 0.22 -4.58 14 7 C -0.19 -10.43 8.69 22.74 0.20 -10.24 14 8 C 0.09 4.91 5.56 -21.30 -0.12 4.79 14 9 C -0.49 -26.09 8.11 23.46 0.19 -25.90 14 10 H 0.08 4.22 6.90 -2.91 -0.02 4.20 14 11 C 0.03 1.68 5.16 85.25 0.44 2.12 14 12 N -0.83 -43.56 10.98 21.82 0.24 -43.32 14 13 Si 0.98 37.91 29.59 68.60 2.03 39.94 14 14 H -0.26 -9.57 7.11 99.48 0.71 -8.86 14 15 H -0.27 -9.92 7.11 99.48 0.71 -9.22 14 16 H -0.26 -9.80 7.11 99.48 0.71 -9.10 14 17 H 0.06 2.17 8.14 -2.39 -0.02 2.15 14 18 H 0.06 2.24 7.52 -2.39 -0.02 2.22 14 19 H 0.05 2.22 6.79 -2.38 -0.02 2.20 14 20 H 0.40 10.89 9.06 -74.06 -0.67 10.22 14 21 H 0.12 4.65 8.06 -2.91 -0.02 4.63 14 22 H 0.12 4.79 8.06 -2.91 -0.02 4.77 14 23 H 0.10 5.76 6.23 -2.91 -0.02 5.74 14 24 H 0.29 13.64 8.30 -92.71 -0.77 12.87 14 Total: -1.00 -60.58 212.79 3.50 -57.08 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.54 Total: 21.83 kcal Atomic # 6 Polarization: -56.56 SS G_CDS: 1.85 Total: -54.72 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.24 Total: -43.32 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -1.16 Total: -20.81 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.94 kcal Total: -60.58 3.50 -57.08 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000140715434.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.127 kcal (2) G-P(sol) polarization free energy of solvation -60.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds