Wall clock time and date at job start Mon Mar 30 2020 02:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47147 * 128.49200 * 3 2 1 5 5 C 1.34507 * 125.67933 * 124.99840 * 4 3 2 6 6 C 1.39281 * 107.18627 * 180.02562 * 5 4 3 7 7 C 1.41597 * 126.55303 * 179.97438 * 6 5 4 8 8 H 1.07992 * 120.00308 * 19.66852 * 7 6 5 9 9 C 1.39693 * 119.99703 * 199.66601 * 7 6 5 10 10 N 1.31032 * 120.00109 * 195.94591 * 9 7 6 11 11 Si 1.86801 * 120.00077 * 15.94332 * 9 7 6 12 12 H 1.48505 * 109.47211 * 269.99839 * 11 9 7 13 13 H 1.48493 * 109.47143 * 30.00141 * 11 9 7 14 14 H 1.48508 * 109.47018 * 150.00225 * 11 9 7 15 15 C 1.41879 * 106.88817 * 0.22626 * 6 5 4 16 16 N 1.30321 * 108.04558 * 359.61698 * 15 6 5 17 17 H 4.40638 * 5.51541 * 180.02562 * 4 1 2 18 18 H 1.08991 * 109.47227 * 8.48742 * 3 2 1 19 19 H 1.09002 * 109.46599 * 248.48735 * 3 2 1 20 20 H 1.07998 * 126.40546 * 0.05718 * 5 4 3 21 21 H 0.97003 * 119.99747 * 354.98990 * 10 9 7 22 22 H 1.07997 * 125.98181 * 179.77060 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8605 -1.0810 5 6 3.9858 1.8918 -0.9394 6 6 4.1865 2.4367 -2.2054 7 6 5.0110 3.5421 -2.5267 8 1 5.7909 3.8499 -1.8461 9 6 4.8155 4.2344 -3.7241 10 7 5.7460 5.0394 -4.1749 11 14 3.2277 4.0126 -4.6829 12 1 3.3828 2.8919 -5.6449 13 1 2.1200 3.7077 -3.7421 14 1 2.9183 5.2618 -5.4239 15 6 3.4023 1.6760 -3.1106 16 7 2.7910 0.7461 -2.4323 17 1 -1.0501 0.0001 0.0002 18 1 3.0098 -1.0155 -0.1517 19 1 3.0091 0.3777 0.9561 20 1 4.4313 2.2331 -0.0167 21 1 6.5385 5.2109 -3.6425 22 1 3.3271 1.8375 -4.1757 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213631227.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:17 Heat of formation + Delta-G solvation = 105.207615 kcal Electronic energy + Delta-G solvation = -9504.638122 eV Core-core repulsion = 7641.208493 eV Total energy + Delta-G solvation = -1863.429629 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 176.064 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.49500 -36.04789 -35.01361 -32.61555 -31.25437 -28.46823 -25.63066 -22.48842 -21.20461 -20.11543 -18.89876 -17.55700 -16.18742 -16.12082 -15.24600 -15.03537 -14.54039 -14.09312 -13.83879 -13.12187 -12.68150 -11.97716 -11.67359 -11.63237 -11.26083 -11.01588 -10.92775 -10.04977 -9.49000 -9.03278 -6.21130 1.05915 1.35319 1.41040 1.55237 1.75549 1.82321 2.04230 2.31087 2.43152 3.29286 3.40177 3.98655 4.29532 4.34438 4.45305 4.92387 5.05029 5.26407 5.57217 5.77715 6.33455 6.34015 6.59328 6.71370 7.01956 7.13365 8.29943 Molecular weight = 176.06amu Principal moments of inertia in cm(-1) A = 0.069928 B = 0.013164 C = 0.011785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.318280 B = 2126.467291 C = 2375.369709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.244 4.244 3 C 0.244 3.756 4 N -0.371 5.371 5 C -0.084 4.084 6 C -0.065 4.065 7 C -0.537 4.537 8 H 0.041 0.959 9 C 0.000 4.000 10 N -0.882 5.882 11 Si 1.104 2.896 12 H -0.256 1.256 13 H -0.271 1.271 14 H -0.281 1.281 15 C -0.045 4.045 16 N -0.315 5.315 17 H 0.253 0.747 18 H 0.115 0.885 19 H 0.142 0.858 20 H 0.180 0.820 21 H 0.269 0.731 22 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.101 -7.872 6.700 13.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.245 4.245 3 C 0.125 3.875 4 N -0.159 5.159 5 C -0.226 4.226 6 C -0.076 4.076 7 C -0.571 4.571 8 H 0.060 0.940 9 C -0.208 4.208 10 N -0.511 5.511 11 Si 0.927 3.073 12 H -0.182 1.182 13 H -0.196 1.196 14 H -0.208 1.208 15 C -0.229 4.229 16 N -0.139 5.139 17 H 0.269 0.731 18 H 0.132 0.868 19 H 0.160 0.840 20 H 0.197 0.803 21 H 0.079 0.921 22 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -9.568 -8.434 5.360 13.835 hybrid contribution 1.818 0.598 1.526 2.448 sum -7.750 -7.836 6.885 12.995 Atomic orbital electron populations 1.25808 0.96832 0.98132 0.97580 1.23521 0.95390 1.02715 1.02850 1.18652 0.84441 0.95744 0.88652 1.47930 1.36654 1.26380 1.04963 1.22817 1.03573 0.97054 0.99197 1.18489 0.99672 0.98053 0.91343 1.19667 1.16658 1.13732 1.07088 0.94041 1.27882 1.04178 0.92234 0.96503 1.70715 1.08024 1.35278 1.37107 0.83275 0.71966 0.76717 0.75337 1.18173 1.19638 1.20799 1.24007 1.02183 0.96873 0.99806 1.76427 1.24433 1.23927 0.89123 0.73094 0.86759 0.84001 0.80344 0.92148 0.81424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.16 19.25 74.32 1.43 -2.73 14 2 C -0.24 -7.22 13.50 31.13 0.42 -6.80 14 3 C 0.24 7.01 6.96 84.58 0.59 7.60 14 4 N -0.37 -15.25 3.63 -354.09 -1.28 -16.53 14 5 C -0.08 -3.77 11.50 84.53 0.97 -2.80 14 6 C -0.07 -3.45 5.47 -21.30 -0.12 -3.57 14 7 C -0.54 -31.23 9.77 23.45 0.23 -31.00 14 8 H 0.04 2.53 8.06 -2.91 -0.02 2.50 14 9 C 0.00 -0.02 5.50 85.16 0.47 0.45 14 10 N -0.88 -52.20 13.67 21.79 0.30 -51.91 14 11 Si 1.10 51.37 24.91 68.60 1.71 53.08 14 12 H -0.26 -10.82 6.59 99.48 0.66 -10.16 14 13 H -0.27 -12.60 6.65 99.48 0.66 -11.94 14 14 H -0.28 -12.55 7.11 99.48 0.71 -11.85 14 15 C -0.04 -2.25 9.32 85.82 0.80 -1.45 14 16 N -0.31 -14.80 12.27 -55.94 -0.69 -15.48 14 17 H 0.25 3.96 7.80 -4.41 -0.03 3.93 14 18 H 0.11 2.78 8.14 -2.39 -0.02 2.76 14 19 H 0.14 3.03 8.06 -2.39 -0.02 3.01 14 20 H 0.18 6.84 8.06 -2.91 -0.02 6.82 14 21 H 0.27 15.81 8.73 -92.71 -0.81 15.00 14 22 H 0.17 8.01 4.27 -2.91 -0.01 8.00 14 Total: -1.00 -68.97 209.22 5.91 -63.06 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 1.08 Total: 8.07 kcal Atomic # 6 Polarization: -45.08 SS G_CDS: 4.79 Total: -40.29 kcal Atomic # 7 Polarization: -82.25 SS G_CDS: -1.67 Total: -83.92 kcal Atomic # 14 Polarization: 51.37 SS G_CDS: 1.71 Total: 53.08 kcal Total: -68.97 5.91 -63.06 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213631227.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.269 kcal (2) G-P(sol) polarization free energy of solvation -68.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds