Wall clock time and date at job start Mon Mar 30 2020 02:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30908 * 1 3 3 Si 1.86794 * 119.99758 * 2 1 4 4 H 1.48503 * 109.47068 * 274.97777 * 3 2 1 5 5 H 1.48493 * 109.47723 * 34.98066 * 3 2 1 6 6 H 1.48507 * 109.47046 * 154.98519 * 3 2 1 7 7 C 1.40030 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99693 * 186.05044 * 7 2 1 9 9 C 1.39766 * 120.00128 * 6.04570 * 7 2 1 10 10 C 1.39161 * 125.74632 * 174.24618 * 9 7 2 11 11 C 1.40565 * 106.52746 * 179.73133 * 10 9 7 12 12 C 1.46525 * 146.71657 * 179.33251 * 11 10 9 13 13 C 1.34247 * 106.66530 * 180.67325 * 12 11 10 14 14 N 1.37139 * 109.51993 * 0.22345 * 13 12 11 15 15 H 0.97001 * 124.89500 * 180.02562 * 14 13 12 16 16 C 1.36287 * 110.21153 * 0.02562 * 14 13 12 17 17 O 1.34762 * 144.62968 * 180.02562 * 16 14 13 18 18 H 0.96996 * 119.99780 * 359.97438 * 1 2 3 19 19 H 1.07998 * 126.73550 * 359.96205 * 10 9 7 20 20 H 1.07999 * 126.66632 * 0.92793 * 12 11 10 21 21 H 1.08001 * 125.23978 * 180.26188 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.3852 2.1072 -1.3948 5 1 1.4971 2.6200 0.8026 6 1 3.5893 1.4121 0.5921 7 6 2.0092 -1.2127 0.0005 8 1 3.0846 -1.2152 0.0991 9 6 1.3162 -2.4198 -0.1264 10 6 1.8940 -3.6794 -0.2534 11 6 0.8340 -4.5980 -0.3459 12 6 0.4385 -6.0008 -0.4966 13 6 -0.9038 -6.0237 -0.5039 14 7 -1.3846 -4.7459 -0.3747 15 1 -2.3242 -4.5061 -0.3531 16 6 -0.3519 -3.8615 -0.2808 17 8 -0.0282 -2.5602 -0.1462 18 1 -0.4849 0.8400 0.0004 19 1 2.9495 -3.9070 -0.2729 20 1 1.0985 -6.8515 -0.5810 21 1 -1.5114 -6.9118 -0.5966 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213638169.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:01 Heat of formation + Delta-G solvation = 28.733161 kcal Electronic energy + Delta-G solvation = -9843.840106 eV Core-core repulsion = 7879.375634 eV Total energy + Delta-G solvation = -1964.464472 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 177.053 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.74645 -39.63662 -35.53080 -32.98857 -30.68047 -29.61107 -26.44895 -22.38125 -21.57013 -21.26118 -18.91629 -18.46131 -16.98698 -16.59598 -16.12911 -15.25312 -14.07195 -13.82386 -13.76104 -13.20238 -13.01990 -12.86704 -12.48387 -12.02859 -11.80098 -11.33788 -10.56934 -8.84842 -8.78472 -8.75828 -6.35682 1.16789 1.38009 1.51119 1.56422 1.59073 1.73507 2.18134 2.48161 3.21885 3.52191 4.30127 4.53386 4.85332 5.06881 5.10614 5.27047 5.56112 5.75501 5.85516 6.07063 6.32604 6.57932 6.69380 6.91480 7.32847 8.25382 Molecular weight = 177.05amu Principal moments of inertia in cm(-1) A = 0.110616 B = 0.012357 C = 0.011168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 253.066227 B = 2265.424589 C = 2506.475071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.020 3.980 3 Si 1.010 2.990 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.248 1.248 7 C -0.478 4.478 8 H 0.117 0.883 9 C 0.186 3.814 10 C -0.406 4.406 11 C -0.172 4.172 12 C -0.223 4.223 13 C 0.037 3.963 14 N -0.532 5.532 15 H 0.418 0.582 16 C 0.002 3.998 17 O -0.176 6.176 18 H 0.293 0.707 19 H 0.118 0.882 20 H 0.155 0.845 21 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.240 -3.196 -0.603 3.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.195 4.195 3 Si 0.828 3.172 4 H -0.183 1.183 5 H -0.188 1.188 6 H -0.171 1.171 7 C -0.507 4.507 8 H 0.134 0.866 9 C 0.135 3.865 10 C -0.428 4.428 11 C -0.178 4.178 12 C -0.249 4.249 13 C -0.089 4.089 14 N -0.144 5.144 15 H 0.256 0.744 16 C -0.150 4.150 17 O -0.074 6.074 18 H 0.103 0.897 19 H 0.136 0.864 20 H 0.172 0.828 21 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -2.746 -2.799 -0.566 3.961 hybrid contribution -0.095 0.758 0.027 0.764 sum -2.841 -2.041 -0.538 3.539 Atomic orbital electron populations 1.69897 1.09471 1.31293 1.34663 1.27248 0.95852 1.05717 0.90705 0.84771 0.78906 0.73836 0.79657 1.18334 1.18837 1.17120 1.19173 0.95596 0.88100 1.47823 0.86553 1.19986 0.76925 0.95272 0.94296 1.20549 0.97152 0.91204 1.33939 1.20305 0.92577 0.95469 1.09438 1.21365 0.95260 0.92901 1.15404 1.22302 0.94297 0.85301 1.06996 1.40430 1.05670 1.03149 1.65149 0.74428 1.19228 0.91251 0.84155 1.20395 1.84225 1.25576 1.20549 1.77040 0.89676 0.86384 0.82758 0.75450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.05 12.00 21.85 0.26 -45.79 14 2 C 0.02 1.07 5.49 85.27 0.47 1.53 14 3 Si 1.01 38.44 29.57 68.60 2.03 40.47 14 4 H -0.26 -9.43 7.11 99.48 0.71 -8.73 14 5 H -0.26 -9.46 7.11 99.48 0.71 -8.75 14 6 H -0.25 -8.93 7.11 99.48 0.71 -8.22 14 7 C -0.48 -27.36 9.29 23.07 0.21 -27.15 14 8 H 0.12 6.16 7.85 -2.91 -0.02 6.14 14 9 C 0.19 11.43 6.76 22.86 0.15 11.59 14 10 C -0.41 -23.80 10.94 23.06 0.25 -23.54 14 11 C -0.17 -9.30 7.23 -20.18 -0.15 -9.45 14 12 C -0.22 -9.16 11.11 23.52 0.26 -8.90 14 13 C 0.04 1.21 11.85 82.95 0.98 2.19 14 14 N -0.53 -21.08 6.00 -303.58 -1.82 -22.91 14 15 H 0.42 13.17 8.96 -92.71 -0.83 12.34 14 16 C 0.00 0.12 9.35 84.37 0.79 0.91 14 17 O -0.18 -10.88 8.93 -16.02 -0.14 -11.02 14 18 H 0.29 14.46 8.30 -92.71 -0.77 13.69 14 19 H 0.12 6.49 8.06 -2.91 -0.02 6.46 14 20 H 0.15 5.30 8.06 -2.91 -0.02 5.28 14 21 H 0.23 4.37 8.06 -2.91 -0.02 4.35 14 Total: -1.00 -73.24 199.12 3.73 -69.51 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.43 Total: 22.56 kcal Atomic # 6 Polarization: -55.79 SS G_CDS: 2.98 Total: -52.82 kcal Atomic # 7 Polarization: -67.14 SS G_CDS: -1.56 Total: -68.70 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -0.14 Total: -11.02 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal Total: -73.24 3.73 -69.51 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213638169.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.239 kcal (2) G-P(sol) polarization free energy of solvation -73.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds