Wall clock time and date at job start Mon Mar 30 2020 02:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.50700 * 109.47487 * 32.16840 * 3 2 1 5 5 C 1.40132 * 126.00571 * 269.99725 * 4 3 2 6 6 N 1.30939 * 108.40012 * 179.74107 * 5 4 3 7 7 N 1.40098 * 108.26658 * 0.40648 * 6 5 4 8 8 C 1.37395 * 126.11999 * 179.85540 * 7 6 5 9 9 H 1.08002 * 119.99706 * 179.68520 * 8 7 6 10 10 C 1.38990 * 120.00047 * 359.96643 * 8 7 6 11 11 N 1.31294 * 119.99879 * 359.72348 * 10 8 7 12 12 Si 1.86801 * 120.00042 * 179.72385 * 10 8 7 13 13 H 1.48501 * 109.46896 * 89.99794 * 12 10 8 14 14 H 1.48499 * 109.47039 * 209.99954 * 12 10 8 15 15 H 1.48502 * 109.46906 * 329.99860 * 12 10 8 16 16 C 1.35236 * 126.00640 * 89.99750 * 4 3 2 17 17 H 1.09001 * 109.47197 * 272.16687 * 3 2 1 18 18 H 1.09000 * 109.46803 * 152.17048 * 3 2 1 19 19 H 1.08003 * 125.80055 * 0.02562 * 5 4 3 20 20 H 0.96995 * 119.99901 * 180.02562 * 11 10 8 21 21 H 1.07994 * 126.21078 * 0.02562 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1109 -1.2018 -0.7564 5 6 3.3862 -2.4626 -0.2103 6 7 3.7973 -3.2492 -1.1730 7 7 3.8077 -2.5147 -2.3660 8 6 4.1806 -2.9835 -3.6025 9 1 4.1455 -2.3292 -4.4611 10 6 4.5972 -4.3013 -3.7495 11 7 4.6397 -5.0966 -2.7057 12 14 5.0968 -4.9407 -5.4320 13 1 6.5513 -4.7193 -5.6338 14 1 4.8007 -6.3934 -5.5174 15 1 4.3356 -4.2178 -6.4824 16 6 3.3760 -1.2537 -2.0816 17 1 2.9713 -0.0380 1.0269 18 1 2.9708 0.9096 -0.4798 19 1 3.2736 -2.7399 0.8274 20 1 4.9308 -6.0161 -2.8082 21 1 3.2660 -0.4429 -2.7864 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213638417.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:22 Heat of formation + Delta-G solvation = 77.321420 kcal Electronic energy + Delta-G solvation = -9524.611282 eV Core-core repulsion = 7594.546506 eV Total energy + Delta-G solvation = -1930.064776 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 177.060 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.35007 -37.49047 -35.50101 -33.09148 -31.89164 -28.41088 -26.27847 -22.42561 -21.00080 -19.37826 -17.95842 -17.34963 -16.06664 -15.22539 -15.16178 -14.89310 -14.67487 -13.63886 -13.49007 -13.30840 -12.96605 -12.84148 -12.55580 -12.14105 -11.97264 -11.26608 -10.56702 -10.06730 -9.06586 -8.44869 -6.25966 1.32094 1.40029 1.56074 1.75579 1.98521 2.02634 2.15940 2.41453 2.94215 3.11109 3.62165 4.41807 4.51287 4.73455 4.99328 5.05639 5.16611 5.34452 5.73413 6.00177 6.35839 6.78558 6.86887 7.52235 7.75198 8.54655 Molecular weight = 177.06amu Principal moments of inertia in cm(-1) A = 0.089007 B = 0.010675 C = 0.010208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 314.507850 B = 2622.350704 C = 2742.281448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C 0.246 3.754 3 C 0.078 3.922 4 C -0.274 4.274 5 C -0.044 4.044 6 N -0.321 5.321 7 N -0.184 5.184 8 C -0.364 4.364 9 H 0.133 0.867 10 C -0.004 4.004 11 N -0.827 5.827 12 Si 1.013 2.987 13 H -0.262 1.262 14 H -0.278 1.278 15 H -0.250 1.250 16 C -0.048 4.048 17 H 0.140 0.860 18 H 0.140 0.860 19 H 0.178 0.822 20 H 0.275 0.725 21 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.166 6.554 -0.086 6.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.202 5.202 2 C -0.070 4.070 3 C 0.037 3.963 4 C -0.290 4.290 5 C -0.220 4.220 6 N -0.150 5.150 7 N 0.049 4.951 8 C -0.495 4.495 9 H 0.151 0.849 10 C -0.215 4.215 11 N -0.455 5.455 12 Si 0.832 3.168 13 H -0.187 1.187 14 H -0.203 1.203 15 H -0.173 1.173 16 C -0.198 4.198 17 H 0.158 0.842 18 H 0.158 0.842 19 H 0.195 0.805 20 H 0.084 0.916 21 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.941 5.122 -0.359 5.220 hybrid contribution 0.240 0.085 -0.354 0.436 sum 1.181 5.207 -0.713 5.387 Atomic orbital electron populations 1.81123 1.15261 1.11865 1.11973 1.30260 0.96094 0.90219 0.90391 1.17564 0.78013 0.97020 1.03665 1.19328 1.19751 0.96806 0.93069 1.24085 1.05100 0.93323 0.99539 1.78105 1.26444 1.20038 0.90425 1.45128 1.37100 1.06438 1.06442 1.20517 1.46790 0.98254 0.83896 0.84933 1.26749 0.95200 0.95852 1.03710 1.70363 1.36703 1.06480 1.31930 0.84680 0.79203 0.77530 0.75368 1.18678 1.20276 1.17340 1.22647 1.09455 0.89851 0.97854 0.84204 0.84193 0.80509 0.91584 0.80679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -19.62 18.54 20.00 0.37 -19.25 14 2 C 0.25 7.70 15.41 89.44 1.38 9.08 14 3 C 0.08 1.90 6.19 28.04 0.17 2.08 14 4 C -0.27 -10.40 5.31 -20.10 -0.11 -10.50 14 5 C -0.04 -1.96 11.96 85.29 1.02 -0.94 14 6 N -0.32 -17.86 10.42 -56.79 -0.59 -18.46 14 7 N -0.18 -9.82 3.74 -190.44 -0.71 -10.54 14 8 C -0.36 -19.18 10.26 84.00 0.86 -18.32 14 9 H 0.13 6.18 7.83 -2.91 -0.02 6.16 14 10 C 0.00 -0.21 5.50 84.95 0.47 0.26 14 11 N -0.83 -46.84 11.82 21.66 0.26 -46.59 14 12 Si 1.01 38.70 29.55 68.60 2.03 40.72 14 13 H -0.26 -9.56 7.11 99.48 0.71 -8.85 14 14 H -0.28 -10.52 7.11 99.48 0.71 -9.82 14 15 H -0.25 -8.85 7.11 99.48 0.71 -8.14 14 16 C -0.05 -2.07 11.37 83.31 0.95 -1.13 14 17 H 0.14 2.47 8.14 -2.39 -0.02 2.46 14 18 H 0.14 2.42 8.14 -2.39 -0.02 2.40 14 19 H 0.18 6.68 8.06 -2.91 -0.02 6.65 14 20 H 0.27 14.34 8.31 -92.71 -0.77 13.57 14 21 H 0.18 6.19 8.06 -2.91 -0.02 6.16 14 Total: -1.00 -70.33 209.92 7.34 -62.99 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 1.24 Total: 10.59 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: 4.74 Total: -19.48 kcal Atomic # 7 Polarization: -94.15 SS G_CDS: -0.68 Total: -94.82 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.72 kcal Total: -70.33 7.34 -62.99 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213638417.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.314 kcal (2) G-P(sol) polarization free energy of solvation -70.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds