Wall clock time and date at job start Mon Mar 30 2020 02:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30915 * 1 3 3 Si 1.86792 * 120.00001 * 2 1 4 4 H 1.48507 * 109.47216 * 269.99793 * 3 2 1 5 5 H 1.48504 * 109.47545 * 29.99751 * 3 2 1 6 6 H 1.48505 * 109.47416 * 149.99585 * 3 2 1 7 7 C 1.39952 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00064 * 180.02562 * 7 2 1 9 9 C 1.40259 * 120.00109 * 0.02562 * 7 2 1 10 10 C 1.38088 * 126.28853 * 180.02562 * 9 7 2 11 11 N 1.37190 * 108.03047 * 179.97438 * 10 9 7 12 12 C 1.37816 * 144.22611 * 179.97438 * 11 10 9 13 13 C 1.34513 * 106.91574 * 179.97438 * 12 11 10 14 14 N 1.34284 * 108.43301 * 0.24800 * 13 12 11 15 15 C 1.31618 * 109.36323 * 359.58808 * 14 13 12 16 16 N 1.38000 * 143.59002 * 180.02562 * 15 14 13 17 17 H 0.96999 * 126.17155 * 0.42991 * 16 15 14 18 18 H 0.96996 * 119.99884 * 0.02562 * 1 2 3 19 19 H 1.08006 * 125.98411 * 359.96838 * 10 9 7 20 20 H 1.07998 * 126.54474 * 0.02562 * 12 11 10 21 21 H 1.08002 * 125.78048 * 179.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4907 2.0464 -1.4001 5 1 1.4406 2.6527 0.7000 6 1 3.5407 1.4402 0.7001 7 6 2.0089 -1.2120 0.0005 8 1 3.0889 -1.2121 0.0010 9 6 1.3076 -2.4267 0.0005 10 6 1.8629 -3.6910 0.0015 11 7 0.8392 -4.6044 0.0017 12 6 0.5413 -5.9500 0.0021 13 6 -0.7998 -6.0539 0.0026 14 7 -1.3216 -4.8166 -0.0029 15 6 -0.3470 -3.9320 0.0020 16 7 -0.0751 -2.5790 0.0018 17 1 -0.7300 -1.8635 0.0026 18 1 -0.4850 0.8400 -0.0004 19 1 2.9182 -3.9206 0.0020 20 1 1.2494 -6.7654 0.0028 21 1 -1.3617 -6.9762 0.0026 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213638501.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:24 Heat of formation + Delta-G solvation = 80.700752 kcal Electronic energy + Delta-G solvation = -9898.531080 eV Core-core repulsion = 7968.612842 eV Total energy + Delta-G solvation = -1929.918237 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 177.060 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.47799 -38.74527 -35.41768 -33.44437 -30.71131 -28.98168 -26.85518 -22.47149 -22.20618 -21.46622 -19.32581 -17.42327 -17.12205 -16.58981 -16.24105 -15.32014 -14.55981 -14.14552 -13.70435 -13.31427 -13.11512 -12.80975 -12.55555 -11.95647 -11.72634 -11.21975 -10.72835 -9.24664 -8.98235 -8.28918 -6.60303 1.11310 1.42660 1.58977 1.62418 1.91403 2.10285 2.17194 2.43267 2.73654 3.13505 4.12952 4.35928 4.72137 4.99383 5.06743 5.11569 5.39935 5.74113 5.92858 6.16733 6.40788 6.60784 6.96125 7.18346 7.62415 8.10971 Molecular weight = 177.06amu Principal moments of inertia in cm(-1) A = 0.114819 B = 0.012419 C = 0.011252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 243.803285 B = 2253.995249 C = 2487.955576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.033 3.967 3 Si 1.018 2.982 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.250 1.250 7 C -0.465 4.465 8 H 0.119 0.881 9 C 0.267 3.733 10 C -0.295 4.295 11 N -0.366 5.366 12 C -0.134 4.134 13 C -0.009 4.009 14 N -0.567 5.567 15 C 0.306 3.694 16 N -0.584 5.584 17 H 0.435 0.565 18 H 0.305 0.695 19 H 0.170 0.830 20 H 0.194 0.806 21 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.475 0.734 0.020 3.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.181 4.181 3 Si 0.837 3.163 4 H -0.185 1.185 5 H -0.193 1.193 6 H -0.173 1.173 7 C -0.498 4.498 8 H 0.136 0.864 9 C 0.158 3.842 10 C -0.417 4.417 11 N -0.040 5.040 12 C -0.267 4.267 13 C -0.161 4.161 14 N -0.298 5.298 15 C -0.042 4.042 16 N -0.216 5.216 17 H 0.286 0.714 18 H 0.116 0.884 19 H 0.187 0.813 20 H 0.211 0.789 21 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 2.566 1.032 0.018 2.766 hybrid contribution 0.619 0.510 -0.010 0.802 sum 3.184 1.543 0.008 3.538 Atomic orbital electron populations 1.68861 1.09438 1.32382 1.37648 1.27123 0.95627 1.05758 0.89559 0.84626 0.78611 0.73427 0.79667 1.18470 1.19292 1.17342 1.19281 0.96167 0.87751 1.46577 0.86366 1.18401 0.79477 0.94090 0.92272 1.21418 0.92563 0.84541 1.43158 1.43173 1.08050 1.06450 1.46367 1.22400 0.98400 0.82687 1.23202 1.22586 0.91425 0.94859 1.07182 1.70047 1.28546 0.99085 1.32105 1.21217 0.84862 0.86564 1.11577 1.42507 1.08168 1.01298 1.69619 0.71435 0.88361 0.81276 0.78893 0.77766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -40.18 10.70 21.84 0.23 -39.94 14 2 C 0.03 1.48 5.50 85.24 0.47 1.95 14 3 Si 1.02 33.55 29.56 68.60 2.03 35.58 14 4 H -0.26 -8.33 7.11 99.48 0.71 -7.62 14 5 H -0.27 -8.53 7.11 99.48 0.71 -7.83 14 6 H -0.25 -7.88 7.11 99.48 0.71 -7.18 14 7 C -0.46 -22.64 9.33 23.18 0.22 -22.42 14 8 H 0.12 5.23 7.85 -2.91 -0.02 5.21 14 9 C 0.27 14.22 6.69 38.44 0.26 14.47 14 10 C -0.30 -15.07 11.97 83.82 1.00 -14.07 14 11 N -0.37 -18.76 3.45 -352.54 -1.22 -19.98 14 12 C -0.13 -5.75 12.05 82.90 1.00 -4.75 14 13 C -0.01 -0.39 11.84 83.46 0.99 0.60 14 14 N -0.57 -29.31 11.30 -197.78 -2.23 -31.54 14 15 C 0.31 16.75 9.59 260.28 2.50 19.25 14 16 N -0.58 -31.87 5.92 -189.05 -1.12 -32.99 14 17 H 0.44 23.40 6.34 -92.71 -0.59 22.82 14 18 H 0.30 12.77 8.30 -92.71 -0.77 12.00 14 19 H 0.17 7.66 8.06 -2.91 -0.02 7.63 14 20 H 0.19 6.50 8.06 -2.91 -0.02 6.47 14 21 H 0.21 6.54 8.06 -2.91 -0.02 6.51 14 Total: -1.00 -60.63 195.88 4.79 -55.84 By element: Atomic # 1 Polarization: 37.35 SS G_CDS: 0.67 Total: 38.02 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 6.43 Total: -4.98 kcal Atomic # 7 Polarization: -120.12 SS G_CDS: -4.33 Total: -124.46 kcal Atomic # 14 Polarization: 33.55 SS G_CDS: 2.03 Total: 35.58 kcal Total: -60.63 4.79 -55.84 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213638501.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.537 kcal (2) G-P(sol) polarization free energy of solvation -60.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds