Wall clock time and date at job start Mon Mar 30 2020 02:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50708 * 109.47466 * 2 1 4 4 C 1.38616 * 119.34074 * 125.00281 * 3 2 1 5 5 C 1.38011 * 119.42553 * 180.02562 * 4 3 2 6 6 C 1.41101 * 118.19627 * 0.27792 * 5 4 3 7 7 C 1.41412 * 120.66496 * 179.72104 * 6 5 4 8 8 H 1.07997 * 120.00197 * 150.51644 * 7 6 5 9 9 C 1.39951 * 119.99605 * 330.51701 * 7 6 5 10 10 N 1.30826 * 119.99904 * 161.73710 * 9 7 6 11 11 Si 1.86800 * 120.00180 * 341.73710 * 9 7 6 12 12 H 1.48503 * 109.46943 * 95.41078 * 11 9 7 13 13 H 1.48498 * 109.47161 * 215.40780 * 11 9 7 14 14 H 1.48496 * 109.47171 * 335.41101 * 11 9 7 15 15 C 1.40719 * 118.67612 * 359.45874 * 6 5 4 16 16 N 1.31495 * 120.40121 * 0.54899 * 15 6 5 17 17 H 1.09000 * 109.47417 * 59.99140 * 1 2 3 18 18 H 1.08995 * 109.47025 * 180.02562 * 1 2 3 19 19 H 1.09007 * 109.46706 * 300.00235 * 1 2 3 20 20 H 1.09007 * 109.46878 * 240.00289 * 2 1 3 21 21 H 1.08994 * 109.47726 * 120.00588 * 2 1 3 22 22 H 1.08003 * 120.28974 * 0.04865 * 4 3 2 23 23 H 1.07997 * 120.90399 * 179.97438 * 5 4 3 24 24 H 0.96993 * 120.00255 * 179.97438 * 10 9 7 25 25 H 1.08000 * 119.79968 * 180.24737 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.9123 1.8301 0.9898 5 6 3.3731 3.1310 0.9918 6 6 2.9190 4.0007 -0.0223 7 6 3.3530 5.3459 -0.0666 8 1 3.4214 5.8603 -1.0136 9 6 3.6938 6.0104 1.1170 10 7 4.4190 7.0983 1.0708 11 14 3.1133 5.3441 2.7628 12 1 4.1791 4.4988 3.3583 13 1 2.8107 6.4754 3.6759 14 1 1.8887 4.5285 2.5624 15 6 2.0299 3.5013 -0.9920 16 7 1.6252 2.2512 -0.9427 17 1 -0.3634 0.5140 -0.8899 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 1.8933 -0.5138 -0.8901 21 1 1.8934 -0.5139 0.8898 22 1 3.2348 1.1369 1.7526 23 1 4.0589 3.4754 1.7517 24 1 4.6550 7.5591 1.8910 25 1 1.6739 4.1501 -1.7786 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213640322.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:26 Heat of formation + Delta-G solvation = 6.216415 kcal Electronic energy + Delta-G solvation = -9960.217722 eV Core-core repulsion = 8130.609944 eV Total energy + Delta-G solvation = -1829.607777 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 177.085 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.68688 -34.36618 -32.81331 -31.10111 -29.58490 -25.46840 -23.17652 -21.60004 -20.45098 -17.45600 -15.78633 -15.30588 -14.54606 -13.62138 -13.58892 -13.19637 -12.77635 -12.33559 -11.93617 -11.69787 -11.20524 -10.97226 -10.71470 -10.49896 -10.20460 -9.93563 -9.46797 -8.43673 -8.11113 -7.70660 -7.06687 -4.58829 2.40217 2.64699 3.02034 3.12492 3.23546 3.88142 4.46096 5.32931 5.48329 5.59670 5.88202 5.97392 6.11713 6.27606 6.31304 6.44505 6.62179 6.69245 6.76129 6.90362 7.19058 7.40999 7.61336 7.80702 8.20828 8.43211 8.63988 9.44043 9.94715 Molecular weight = 177.08amu Principal moments of inertia in cm(-1) A = 0.068830 B = 0.013745 C = 0.012422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.702688 B = 2036.676702 C = 2253.472770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.048 4.048 3 C -0.019 4.019 4 C -0.120 4.120 5 C -0.211 4.211 6 C 0.042 3.958 7 C -0.436 4.436 8 H 0.095 0.905 9 C 0.084 3.916 10 N -0.801 5.801 11 Si 0.911 3.089 12 H -0.269 1.269 13 H -0.287 1.287 14 H -0.246 1.246 15 C 0.006 3.994 16 N -0.457 5.457 17 H 0.061 0.939 18 H 0.042 0.958 19 H 0.046 0.954 20 H 0.058 0.942 21 H 0.057 0.943 22 H 0.102 0.898 23 H 0.108 0.892 24 H 0.287 0.713 25 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.891 -6.465 2.406 7.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.086 4.086 3 C -0.154 4.154 4 C -0.140 4.140 5 C -0.237 4.237 6 C 0.037 3.963 7 C -0.465 4.465 8 H 0.113 0.887 9 C -0.136 4.136 10 N -0.424 5.424 11 Si 0.737 3.263 12 H -0.195 1.195 13 H -0.214 1.214 14 H -0.169 1.169 15 C -0.159 4.159 16 N -0.165 5.165 17 H 0.080 0.920 18 H 0.061 0.939 19 H 0.065 0.935 20 H 0.076 0.924 21 H 0.076 0.924 22 H 0.120 0.880 23 H 0.125 0.875 24 H 0.098 0.902 25 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.322 -6.554 1.878 7.584 hybrid contribution 0.614 0.328 1.493 1.647 sum -2.709 -6.226 3.371 7.580 Atomic orbital electron populations 1.21652 0.95926 0.99837 1.02211 1.20046 0.95491 0.92444 1.00602 1.20262 1.03172 0.95833 0.96107 1.21378 0.98202 0.96070 0.98353 1.21350 1.05273 0.93855 1.03173 1.18644 0.90792 0.94360 0.92470 1.19456 1.35907 0.95270 0.95868 0.88689 1.26174 0.91446 0.94167 1.01794 1.69685 1.25111 1.15911 1.31734 0.86312 0.81609 0.78357 0.80014 1.19537 1.21449 1.16945 1.22560 0.99604 0.91762 1.01929 1.66779 1.22910 1.04178 1.22590 0.92022 0.93919 0.93501 0.92367 0.92384 0.87990 0.87479 0.90227 0.84860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.77 37.16 0.36 -1.85 15 2 C -0.05 -0.83 6.32 -27.88 -0.18 -1.01 15 3 C -0.02 -0.41 6.19 -82.35 -0.51 -0.92 15 4 C -0.12 -2.67 9.68 -39.53 -0.38 -3.05 15 5 C -0.21 -5.14 7.30 -38.58 -0.28 -5.42 15 6 C 0.04 1.08 5.12 -106.67 -0.55 0.53 15 7 C -0.44 -11.62 9.60 -37.73 -0.36 -11.98 15 8 H 0.10 2.61 8.06 -52.49 -0.42 2.19 15 9 C 0.08 2.17 5.42 -17.34 -0.09 2.08 15 10 N -0.80 -20.90 13.93 55.55 0.77 -20.13 15 11 Si 0.91 20.54 24.53 -169.99 -4.17 16.37 15 12 H -0.27 -5.87 6.70 56.52 0.38 -5.49 15 13 H -0.29 -6.20 7.11 56.52 0.40 -5.80 15 14 H -0.25 -5.79 6.85 56.52 0.39 -5.40 15 15 C 0.01 0.14 10.98 -16.76 -0.18 -0.04 15 16 N -0.46 -10.80 9.83 -8.78 -0.09 -10.89 15 17 H 0.06 1.05 7.93 -51.93 -0.41 0.64 15 18 H 0.04 0.56 8.14 -51.93 -0.42 0.13 15 19 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 20 H 0.06 0.97 8.14 -51.92 -0.42 0.55 15 21 H 0.06 0.89 7.85 -51.93 -0.41 0.49 15 22 H 0.10 1.94 7.94 -52.48 -0.42 1.52 15 23 H 0.11 2.55 4.79 -52.49 -0.25 2.30 15 24 H 0.29 6.76 8.30 -40.82 -0.34 6.42 15 25 H 0.13 3.01 8.06 -52.49 -0.42 2.59 15 LS Contribution 216.67 15.07 3.27 3.27 Total: -1.00 -27.41 216.67 -5.16 -32.57 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -2.77 Total: 0.47 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: -2.17 Total: -21.66 kcal Atomic # 7 Polarization: -31.70 SS G_CDS: 0.69 Total: -31.01 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.17 Total: 16.37 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -27.41 -5.16 -32.57 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213640322.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.788 kcal (2) G-P(sol) polarization free energy of solvation -27.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds