Wall clock time and date at job start Mon Mar 30 2020 02:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30805 * 1 3 3 Si 1.86807 * 119.99694 * 2 1 4 4 H 1.48500 * 109.47131 * 274.98196 * 3 2 1 5 5 H 1.48494 * 109.47216 * 34.98614 * 3 2 1 6 6 H 1.48507 * 109.46707 * 154.98344 * 3 2 1 7 7 C 1.40156 * 120.00632 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00669 * 186.03253 * 7 2 1 9 9 C 1.39758 * 119.99515 * 6.02107 * 7 2 1 10 10 C 1.39462 * 126.19618 * 174.24151 * 9 7 2 11 11 C 1.39922 * 106.43933 * 180.02562 * 10 9 7 12 12 C 1.35526 * 107.53559 * 0.02562 * 11 10 9 13 13 O 1.34782 * 108.91488 * 359.97438 * 12 11 10 14 14 C 1.51551 * 110.00956 * 179.97438 * 12 11 10 15 15 C 1.54398 * 105.05745 * 17.03749 * 14 12 11 16 16 C 1.51255 * 142.07172 * 180.02562 * 11 10 9 17 17 H 0.96993 * 119.99979 * 359.97438 * 1 2 3 18 18 H 1.08001 * 126.77555 * 0.02562 * 10 9 7 19 19 H 1.09004 * 110.32802 * 135.93092 * 14 12 11 20 20 H 1.09000 * 110.32595 * 258.14298 * 14 12 11 21 21 H 1.09002 * 110.91632 * 92.31295 * 15 14 12 22 22 H 1.08994 * 110.91944 * 215.89938 * 15 14 12 23 23 H 1.09001 * 110.34049 * 281.89493 * 16 11 10 24 24 H 1.09004 * 110.34603 * 44.14746 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 2.3842 2.1073 -1.3948 5 1 1.4961 2.6200 0.8027 6 1 3.5883 1.4121 0.5921 7 6 2.0090 -1.2137 -0.0005 8 1 3.0845 -1.2163 0.0977 9 6 1.3160 -2.4207 -0.1280 10 6 1.8850 -3.6874 -0.2570 11 6 0.8213 -4.5911 -0.3551 12 6 -0.3287 -3.8773 -0.2865 13 8 -0.0248 -2.5714 -0.1496 14 6 -1.5222 -4.8057 -0.3884 15 6 -0.9616 -6.2136 -0.0926 16 6 0.5183 -6.0651 -0.5088 17 1 -0.4850 0.8400 0.0004 18 1 2.9386 -3.9240 -0.2772 19 1 -2.2763 -4.5355 0.3509 20 1 -1.9452 -4.7699 -1.3923 21 1 -1.0461 -6.4512 0.9679 22 1 -1.4630 -6.9675 -0.6993 23 1 0.6533 -6.3735 -1.5455 24 1 1.1578 -6.6540 0.1489 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213646888.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:03 Heat of formation + Delta-G solvation = -18.958522 kcal Electronic energy + Delta-G solvation = -10185.146935 eV Core-core repulsion = 8256.728829 eV Total energy + Delta-G solvation = -1928.418106 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.46586 -37.60087 -35.50336 -32.47268 -30.01626 -28.47368 -26.18400 -22.35105 -21.18132 -20.86347 -18.56579 -17.13897 -16.74705 -16.35281 -15.36001 -15.06284 -14.28624 -13.61199 -13.51476 -13.11558 -12.97064 -12.79533 -12.39000 -11.95538 -11.94506 -11.73531 -11.65293 -11.32479 -9.94968 -9.01998 -8.79282 -6.46696 1.16587 1.35256 1.53820 1.65272 2.10205 2.15525 2.58609 3.14900 3.89282 4.12353 4.23153 4.57597 4.74481 4.86802 4.92350 4.95821 5.05231 5.15124 5.30121 5.39318 5.56849 5.66787 6.01301 6.27408 6.62408 6.70513 7.24625 8.24142 Molecular weight = 178.07amu Principal moments of inertia in cm(-1) A = 0.102452 B = 0.011834 C = 0.010741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 273.233242 B = 2365.432154 C = 2606.160647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.020 3.980 3 Si 1.010 2.990 4 H -0.258 1.258 5 H -0.262 1.262 6 H -0.249 1.249 7 C -0.483 4.483 8 H 0.111 0.889 9 C 0.172 3.828 10 C -0.409 4.409 11 C -0.174 4.174 12 C -0.222 4.222 13 O -0.178 6.178 14 C -0.006 4.006 15 C -0.099 4.099 16 C -0.048 4.048 17 H 0.294 0.706 18 H 0.115 0.885 19 H 0.067 0.933 20 H 0.076 0.924 21 H 0.079 0.921 22 H 0.115 0.885 23 H 0.079 0.921 24 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.209 -4.333 -0.517 4.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.196 4.196 3 Si 0.828 3.172 4 H -0.182 1.182 5 H -0.186 1.186 6 H -0.172 1.172 7 C -0.512 4.512 8 H 0.129 0.871 9 C 0.120 3.880 10 C -0.429 4.429 11 C -0.175 4.175 12 C -0.270 4.270 13 O -0.076 6.076 14 C -0.044 4.044 15 C -0.136 4.136 16 C -0.085 4.085 17 H 0.104 0.896 18 H 0.133 0.867 19 H 0.085 0.915 20 H 0.095 0.905 21 H 0.098 0.902 22 H 0.134 0.866 23 H 0.097 0.903 24 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.659 -4.044 -0.488 4.399 hybrid contribution 0.557 0.834 -0.005 1.002 sum -1.102 -3.211 -0.493 3.430 Atomic orbital electron populations 1.69877 1.09544 1.31377 1.34036 1.27278 0.95849 1.05739 0.90784 0.84783 0.78848 0.73836 0.79730 1.18245 1.18645 1.17220 1.19164 0.95543 0.88515 1.47992 0.87082 1.20204 0.78902 0.95204 0.93683 1.20957 0.97563 0.92003 1.32410 1.21283 0.93428 0.97842 1.04970 1.23747 1.00247 0.82555 1.20420 1.84182 1.24574 1.25167 1.73667 1.20481 0.91324 0.90788 1.01771 1.22385 0.93863 0.94641 1.02748 1.20545 0.97422 0.88943 1.01621 0.89589 0.86725 0.91467 0.90550 0.90234 0.86639 0.90303 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.73 12.03 21.87 0.26 -46.47 14 2 C 0.02 1.05 5.49 85.31 0.47 1.52 14 3 Si 1.01 39.04 29.57 68.60 2.03 41.07 14 4 H -0.26 -9.52 7.11 99.48 0.71 -8.81 14 5 H -0.26 -9.50 7.11 99.48 0.71 -8.80 14 6 H -0.25 -9.12 7.11 99.48 0.71 -8.41 14 7 C -0.48 -28.16 9.32 23.10 0.22 -27.94 14 8 H 0.11 6.00 7.86 -2.91 -0.02 5.98 14 9 C 0.17 10.71 6.79 22.93 0.16 10.87 14 10 C -0.41 -23.53 10.95 22.97 0.25 -23.28 14 11 C -0.17 -8.91 6.91 -19.91 -0.14 -9.05 14 12 C -0.22 -11.87 8.21 25.33 0.21 -11.67 14 13 O -0.18 -11.21 9.00 -13.58 -0.12 -11.33 14 14 C -0.01 -0.25 6.79 30.59 0.21 -0.04 14 15 C -0.10 -2.92 7.12 31.56 0.22 -2.70 14 16 C -0.05 -1.75 6.78 30.52 0.21 -1.54 14 17 H 0.29 14.78 8.29 -92.71 -0.77 14.01 14 18 H 0.11 6.19 8.06 -2.91 -0.02 6.17 14 19 H 0.07 2.40 8.14 -2.39 -0.02 2.38 14 20 H 0.08 2.65 8.14 -2.39 -0.02 2.63 14 21 H 0.08 2.16 8.14 -2.39 -0.02 2.14 14 22 H 0.12 2.41 8.14 -2.39 -0.02 2.39 14 23 H 0.08 2.58 8.14 -2.39 -0.02 2.56 14 24 H 0.07 2.41 8.14 -2.39 -0.02 2.39 14 Total: -1.00 -71.11 213.33 5.16 -65.95 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 1.19 Total: 14.62 kcal Atomic # 6 Polarization: -65.63 SS G_CDS: 1.80 Total: -63.83 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 0.26 Total: -46.47 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -0.12 Total: -11.33 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Total: -71.11 5.16 -65.95 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213646888.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.990 kcal (2) G-P(sol) polarization free energy of solvation -71.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds