Wall clock time and date at job start Mon Mar 30 2020 02:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86806 * 120.00024 * 2 1 4 4 H 1.48500 * 109.46978 * 274.98300 * 3 2 1 5 5 H 1.48492 * 109.47174 * 34.98128 * 3 2 1 6 6 H 1.48500 * 109.46847 * 154.98662 * 3 2 1 7 7 C 1.40235 * 119.99775 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99711 * 186.04068 * 7 2 1 9 9 C 1.39998 * 120.00137 * 6.04175 * 7 2 1 10 10 N 1.32939 * 125.96040 * 354.19595 * 9 7 2 11 11 C 1.32729 * 109.22360 * 180.11092 * 10 9 7 12 12 C 1.36309 * 108.57312 * 0.02661 * 11 10 9 13 13 N 1.36162 * 107.31105 * 359.88292 * 12 11 10 14 14 C 1.46932 * 110.87190 * 180.37401 * 13 12 11 15 15 C 1.54466 * 105.58784 * 342.65497 * 14 13 12 16 16 C 1.51313 * 142.80816 * 179.76260 * 12 11 10 17 17 H 0.97005 * 119.99456 * 0.02562 * 1 2 3 18 18 H 1.07994 * 125.71555 * 180.02562 * 11 10 9 19 19 H 1.08995 * 110.21885 * 101.67187 * 14 13 12 20 20 H 1.08997 * 110.21802 * 223.60215 * 14 13 12 21 21 H 1.09001 * 111.03098 * 267.82106 * 15 14 13 22 22 H 1.08997 * 110.87232 * 144.12238 * 15 14 13 23 23 H 1.09000 * 110.46876 * 315.34467 * 16 12 11 24 24 H 1.08997 * 110.46322 * 77.93539 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 2.3831 2.1072 -1.3948 5 1 1.4951 2.6200 0.8026 6 1 3.5872 1.4120 0.5920 7 6 2.0081 -1.2145 -0.0005 8 1 3.0835 -1.2171 0.0979 9 6 1.3139 -2.4235 -0.1287 10 7 -0.0076 -2.5666 -0.1480 11 6 -0.3060 -3.8532 -0.2805 12 6 0.8555 -4.5634 -0.3483 13 7 1.8811 -3.6726 -0.2559 14 6 3.1784 -4.3585 -0.3298 15 6 2.8787 -5.8458 -0.0399 16 6 1.4038 -5.9670 -0.4854 17 1 -0.4849 0.8401 -0.0004 18 1 -1.3021 -4.2678 -0.3268 19 1 3.6068 -4.2478 -1.3259 20 1 3.8597 -3.9577 0.4207 21 1 2.9840 -6.0662 1.0224 22 1 3.5202 -6.4946 -0.6363 23 1 0.8635 -6.6528 0.1673 24 1 1.3448 -6.2996 -1.5217 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213647058.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:04 Heat of formation + Delta-G solvation = 59.544483 kcal Electronic energy + Delta-G solvation = -10280.910364 eV Core-core repulsion = 8388.189155 eV Total energy + Delta-G solvation = -1892.721210 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.32389 -35.23025 -33.09834 -30.08964 -28.01899 -26.73955 -23.81964 -21.01526 -19.81381 -18.46777 -16.80648 -15.50317 -15.15133 -14.11877 -13.01839 -12.58255 -12.38880 -12.37881 -11.82056 -11.61824 -11.17325 -11.04970 -10.82447 -10.47867 -10.39719 -10.08914 -9.10689 -7.86008 -7.82186 -6.89629 -6.36585 -4.20626 3.07351 3.18171 3.21449 3.67078 4.04983 4.42284 4.71633 5.06166 5.30051 5.46792 5.71177 5.87204 6.08603 6.16543 6.25766 6.42292 6.55185 6.57473 7.22985 7.38422 7.58369 8.23177 8.32478 8.57596 9.02645 9.37201 10.26684 10.57810 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.072806 B = 0.013798 C = 0.011759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.492122 B = 2028.768809 C = 2380.669734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.082 3.918 3 Si 0.911 3.089 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.465 4.465 8 H 0.075 0.925 9 C 0.396 3.604 10 N -0.509 5.509 11 C 0.005 3.995 12 C -0.172 4.172 13 N -0.526 5.526 14 C 0.125 3.875 15 C -0.130 4.130 16 C -0.029 4.029 17 H 0.272 0.728 18 H 0.133 0.867 19 H 0.060 0.940 20 H 0.066 0.934 21 H 0.070 0.930 22 H 0.075 0.925 23 H 0.062 0.938 24 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.136 -5.600 -0.481 7.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.141 4.141 3 Si 0.736 3.264 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.504 4.504 8 H 0.094 0.906 9 C 0.154 3.846 10 N -0.230 5.230 11 C -0.148 4.148 12 C -0.285 4.285 13 N -0.218 5.218 14 C 0.001 3.999 15 C -0.168 4.168 16 C -0.068 4.068 17 H 0.083 0.917 18 H 0.150 0.850 19 H 0.079 0.921 20 H 0.084 0.916 21 H 0.089 0.911 22 H 0.094 0.906 23 H 0.081 0.919 24 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.528 -4.759 -0.399 6.581 hybrid contribution 1.013 0.045 -0.102 1.019 sum 5.541 -4.714 -0.501 7.292 Atomic orbital electron populations 1.70022 1.06907 1.27574 1.32549 1.25691 0.94743 1.00142 0.93527 0.86276 0.80165 0.81195 0.78775 1.19728 1.20254 1.18935 1.18114 0.93877 0.87879 1.50570 0.90649 1.20049 0.86690 0.82388 0.95432 1.71396 1.09545 1.13672 1.28378 1.21436 0.94810 0.91148 1.07377 1.21928 0.91077 0.90610 1.24838 1.46754 1.05344 1.07599 1.62126 1.21711 0.85889 0.91600 1.00729 1.22642 0.97336 0.95308 1.01553 1.20181 0.93530 0.93161 0.99929 0.91744 0.84975 0.92137 0.91564 0.91079 0.90604 0.91898 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -21.53 11.92 55.56 0.66 -20.87 14 2 C 0.08 2.25 5.49 -17.29 -0.09 2.15 14 3 Si 0.91 19.79 29.57 -169.99 -5.03 14.77 14 4 H -0.27 -5.81 7.11 56.52 0.40 -5.40 14 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 14 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 14 7 C -0.46 -13.32 9.45 -38.17 -0.36 -13.69 14 8 H 0.08 2.02 7.86 -52.49 -0.41 1.61 14 9 C 0.40 11.67 7.61 -155.41 -1.18 10.49 14 10 N -0.51 -15.50 9.42 -12.66 -0.12 -15.62 14 11 C 0.00 0.13 11.85 -17.86 -0.21 -0.09 14 12 C -0.17 -4.16 7.55 -81.06 -0.61 -4.77 14 13 N -0.53 -13.35 3.71 -109.99 -0.41 -13.76 14 14 C 0.12 2.41 7.77 -3.04 -0.02 2.38 14 15 C -0.13 -2.03 7.16 -25.15 -0.18 -2.21 14 16 C -0.03 -0.53 6.85 -26.77 -0.18 -0.71 14 17 H 0.27 7.09 8.29 -40.82 -0.34 6.76 14 18 H 0.13 3.10 8.06 -52.49 -0.42 2.68 14 19 H 0.06 1.09 8.14 -51.93 -0.42 0.67 14 20 H 0.07 1.21 8.14 -51.93 -0.42 0.78 14 21 H 0.07 1.05 8.14 -51.93 -0.42 0.62 14 22 H 0.08 0.93 8.14 -51.93 -0.42 0.51 14 23 H 0.06 1.02 8.14 -51.93 -0.42 0.59 14 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 14 LS Contribution 212.73 15.07 3.21 3.21 Total: -1.00 -32.97 212.73 -7.04 -40.01 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: -2.51 Total: -1.30 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -2.85 Total: -6.44 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: 0.14 Total: -50.24 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.03 Total: 14.77 kcal Total LS contribution 3.21 Total: 3.21 kcal Total: -32.97 -7.04 -40.01 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213647058.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.554 kcal (2) G-P(sol) polarization free energy of solvation -32.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds