Wall clock time and date at job start Mon Mar 30 2020 02:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30896 * 1 3 3 Si 1.86807 * 119.99707 * 2 1 4 4 H 1.48505 * 109.46552 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47183 * 299.99949 * 3 2 1 6 6 H 1.48498 * 109.47052 * 60.00095 * 3 2 1 7 7 C 1.39849 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00164 * 180.02562 * 7 2 1 9 9 C 1.41429 * 119.99684 * 359.97438 * 7 2 1 10 10 C 1.42139 * 126.55784 * 180.02562 * 9 7 2 11 11 C 1.35152 * 105.48557 * 180.20600 * 10 9 7 12 12 N 1.35759 * 107.80476 * 359.74802 * 11 10 9 13 13 N 1.29342 * 109.65193 * 0.19791 * 12 11 10 14 14 C 1.47453 * 110.55399 * 179.91666 * 12 11 10 15 15 C 1.54307 * 105.66481 * 17.65036 * 14 12 11 16 16 C 1.51346 * 141.97791 * 180.95299 * 11 10 9 17 17 H 0.97004 * 119.99482 * 359.97438 * 1 2 3 18 18 H 1.08002 * 127.25392 * 359.93786 * 10 9 7 19 19 H 1.08996 * 110.21115 * 136.70055 * 14 12 11 20 20 H 1.09003 * 110.21304 * 258.52723 * 14 12 11 21 21 H 1.09003 * 110.93788 * 92.08818 * 15 14 12 22 22 H 1.09000 * 110.94096 * 215.77496 * 15 14 12 23 23 H 1.09002 * 110.64693 * 43.86463 * 16 11 10 24 24 H 1.08995 * 110.38070 * 281.31259 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.7029 1.3464 0.0006 5 1 1.8842 2.3965 -1.2124 6 1 1.8841 2.3965 1.2125 7 6 2.0082 -1.2111 -0.0005 8 1 3.0882 -1.2111 -0.0001 9 6 1.3011 -2.4359 -0.0005 10 6 1.8665 -3.7400 -0.0005 11 6 0.8151 -4.5892 -0.0052 12 7 -0.3200 -3.8444 -0.0022 13 7 -0.0155 -2.5874 -0.0002 14 6 -1.5103 -4.7148 -0.0091 15 6 -1.0114 -6.1063 0.4336 16 6 0.4731 -6.0634 0.0070 17 1 -0.4849 0.8401 0.0004 18 1 2.9153 -3.9978 -0.0015 19 1 -2.2546 -4.3405 0.6937 20 1 -1.9330 -4.7668 -1.0124 21 1 -1.1034 -6.2278 1.5130 22 1 -1.5455 -6.8973 -0.0929 23 1 1.0929 -6.5957 0.7286 24 1 0.5964 -6.4900 -0.9884 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213647144.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:07 Heat of formation + Delta-G solvation = 78.657693 kcal Electronic energy + Delta-G solvation = -10207.437520 eV Core-core repulsion = 8315.545121 eV Total energy + Delta-G solvation = -1891.892399 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.69557 -35.38172 -32.81370 -30.22239 -28.08796 -26.27812 -24.76987 -20.93389 -19.66028 -18.85274 -16.00664 -15.79486 -14.84984 -14.41566 -13.28886 -12.88658 -12.76758 -12.48297 -11.69351 -11.50002 -11.08253 -11.03850 -10.68825 -10.55544 -10.31253 -9.74555 -9.05437 -8.18851 -7.33203 -7.17079 -6.17183 -4.03435 3.21252 3.30517 3.35897 3.55231 4.04164 4.29493 4.50883 4.81275 5.14891 5.23856 5.64338 5.81720 5.90006 5.95192 6.02889 6.19534 6.35610 6.77297 7.39864 7.45363 7.56447 7.95364 8.34104 8.82742 9.13097 9.39541 10.49345 10.81608 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.102662 B = 0.011945 C = 0.010836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 272.675184 B = 2343.487718 C = 2583.300297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.449 4.449 8 H 0.079 0.921 9 C 0.194 3.806 10 C -0.273 4.273 11 C -0.044 4.044 12 N -0.359 5.359 13 N -0.310 5.310 14 C 0.138 3.862 15 C -0.131 4.131 16 C -0.051 4.051 17 H 0.265 0.735 18 H 0.120 0.880 19 H 0.076 0.924 20 H 0.070 0.930 21 H 0.077 0.923 22 H 0.086 0.914 23 H 0.074 0.926 24 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.431 -8.272 0.231 8.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.146 4.146 3 Si 0.729 3.271 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.488 4.488 8 H 0.097 0.903 9 C 0.044 3.956 10 C -0.304 4.304 11 C -0.170 4.170 12 N -0.144 5.144 13 N -0.141 5.141 14 C 0.016 3.984 15 C -0.170 4.170 16 C -0.090 4.090 17 H 0.076 0.924 18 H 0.138 0.862 19 H 0.094 0.906 20 H 0.088 0.912 21 H 0.095 0.905 22 H 0.104 0.896 23 H 0.092 0.908 24 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.914 -7.508 0.234 8.057 hybrid contribution 1.122 0.375 -0.023 1.183 sum -1.792 -7.133 0.211 7.358 Atomic orbital electron populations 1.70000 1.06789 1.26902 1.37801 1.25745 0.94732 1.00203 0.93922 0.86347 0.80604 0.82194 0.77911 1.18855 1.20488 1.20494 1.18527 0.93263 0.87853 1.49191 0.90252 1.19342 0.87688 0.92084 0.96513 1.20909 0.96426 0.92956 1.20122 1.22072 0.90683 0.92533 1.11679 1.46956 1.05265 1.04499 1.57640 1.74787 1.16359 0.92031 1.30874 1.21884 0.86861 0.88042 1.01633 1.22676 0.96496 0.95817 1.01982 1.20517 0.94960 0.92127 1.01383 0.92398 0.86241 0.90561 0.91202 0.90457 0.89570 0.90778 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -23.65 11.97 55.54 0.67 -22.99 14 2 C 0.07 2.04 5.49 -17.35 -0.10 1.94 14 3 Si 0.90 20.87 29.56 -169.99 -5.02 15.85 14 4 H -0.26 -5.93 7.11 56.52 0.40 -5.53 14 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 14 6 H -0.28 -6.34 7.11 56.52 0.40 -5.93 14 7 C -0.45 -13.40 9.41 -37.77 -0.36 -13.76 14 8 H 0.08 2.22 7.84 -52.49 -0.41 1.81 14 9 C 0.19 5.86 6.77 -84.86 -0.57 5.28 14 10 C -0.27 -7.19 10.98 -39.18 -0.43 -7.62 14 11 C -0.04 -1.02 7.48 -81.64 -0.61 -1.63 14 12 N -0.36 -9.03 4.42 -55.42 -0.25 -9.28 14 13 N -0.31 -9.38 10.50 32.28 0.34 -9.04 14 14 C 0.14 2.49 7.77 -2.84 -0.02 2.47 14 15 C -0.13 -1.80 7.16 -25.25 -0.18 -1.99 14 16 C -0.05 -0.83 6.85 -26.77 -0.18 -1.02 14 17 H 0.27 7.31 8.30 -40.82 -0.34 6.97 14 18 H 0.12 2.84 8.06 -52.49 -0.42 2.42 14 19 H 0.08 1.30 8.14 -51.93 -0.42 0.88 14 20 H 0.07 1.15 8.14 -51.93 -0.42 0.73 14 21 H 0.08 0.99 8.14 -51.93 -0.42 0.57 14 22 H 0.09 0.87 8.14 -51.93 -0.42 0.45 14 23 H 0.07 1.08 8.14 -51.93 -0.42 0.65 14 24 H 0.07 1.07 8.14 -51.93 -0.42 0.64 14 LS Contribution 212.74 15.07 3.21 3.21 Total: -1.00 -34.83 212.74 -6.02 -40.85 By element: Atomic # 1 Polarization: 0.24 SS G_CDS: -2.51 Total: -2.27 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -2.45 Total: -16.32 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.76 Total: -41.31 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 3.21 Total: 3.21 kcal Total: -34.83 -6.02 -40.85 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213647144.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.505 kcal (2) G-P(sol) polarization free energy of solvation -34.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds