Wall clock time and date at job start Mon Mar 30 2020 02:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30859 * 1 3 3 Si 1.86800 * 119.99689 * 2 1 4 4 H 1.48506 * 109.46911 * 240.00219 * 3 2 1 5 5 H 1.48496 * 109.47229 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47171 * 120.00589 * 3 2 1 7 7 C 1.40067 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00262 * 179.97438 * 7 2 1 9 9 C 1.40070 * 120.00115 * 0.02562 * 7 2 1 10 10 C 1.39510 * 127.05686 * 0.02562 * 9 7 2 11 11 N 1.32852 * 107.46882 * 180.23000 * 10 9 7 12 12 C 1.31593 * 110.10494 * 359.72536 * 11 10 9 13 13 N 1.34880 * 109.37404 * 0.19755 * 12 11 10 14 14 C 1.46982 * 111.27694 * 180.02562 * 13 12 11 15 15 C 1.54372 * 105.50808 * 342.90728 * 14 13 12 16 16 C 1.51716 * 140.82720 * 179.88315 * 12 11 10 17 17 H 0.96999 * 120.00317 * 359.97438 * 1 2 3 18 18 H 1.07992 * 126.26636 * 0.02562 * 10 9 7 19 19 H 1.09001 * 110.23851 * 223.89500 * 14 13 12 20 20 H 1.09005 * 110.23759 * 101.91758 * 14 13 12 21 21 H 1.09000 * 110.96528 * 267.63355 * 15 14 13 22 22 H 1.09005 * 110.96467 * 143.87760 * 15 14 13 23 23 H 1.09004 * 110.46750 * 315.65104 * 16 12 11 24 24 H 1.08996 * 110.47113 * 78.12208 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0962 1.6965 -1.2126 5 1 1.2775 2.7464 0.0006 6 1 3.0963 1.6964 1.2124 7 6 2.0090 -1.2130 -0.0005 8 1 3.0890 -1.2130 -0.0010 9 6 1.3087 -2.4261 -0.0016 10 6 -0.0759 -2.5975 -0.0028 11 7 -0.3159 -3.9042 0.0015 12 6 0.8178 -4.5724 -0.0006 13 7 1.8493 -3.7034 -0.0021 14 6 3.1397 -4.4072 -0.0051 15 6 2.8220 -5.8533 0.4318 16 6 1.3445 -5.9952 0.0034 17 1 -0.4850 0.8400 0.0004 18 1 -0.8168 -1.8119 -0.0034 19 1 3.8250 -3.9412 0.7029 20 1 3.5698 -4.4017 -1.0066 21 1 2.9275 -5.9669 1.5108 22 1 3.4522 -6.5680 -0.0976 23 1 0.7951 -6.6030 0.7224 24 1 1.2752 -6.4300 -0.9937 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213647449.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:38 Heat of formation + Delta-G solvation = 53.715205 kcal Electronic energy + Delta-G solvation = -10282.810905 eV Core-core repulsion = 8389.836919 eV Total energy + Delta-G solvation = -1892.973986 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.32209 -35.18906 -33.38789 -30.48867 -27.72913 -26.65883 -24.03322 -20.97776 -19.75161 -18.29434 -17.01826 -15.59024 -15.07678 -13.99370 -13.19879 -12.69117 -12.57014 -12.36061 -12.19727 -11.46369 -11.24900 -10.96754 -10.81520 -10.58983 -10.41429 -10.09399 -9.32910 -8.08635 -8.01894 -6.80379 -6.59316 -4.18431 2.99412 3.09576 3.12157 3.70539 3.93604 4.32524 4.73580 4.94942 5.22608 5.35511 5.51082 5.69976 5.97941 6.07029 6.16957 6.35971 6.51739 7.08262 7.18157 7.65560 7.86225 8.13899 8.52336 8.94248 9.05326 9.10595 10.05248 10.36978 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.073062 B = 0.013698 C = 0.011690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.142501 B = 2043.609531 C = 2394.624801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.072 3.928 3 Si 0.926 3.074 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.446 4.446 8 H 0.068 0.932 9 C 0.195 3.805 10 C -0.125 4.125 11 N -0.473 5.473 12 C 0.046 3.954 13 N -0.516 5.516 14 C 0.122 3.878 15 C -0.129 4.129 16 C -0.017 4.017 17 H 0.279 0.721 18 H 0.190 0.810 19 H 0.068 0.932 20 H 0.063 0.937 21 H 0.074 0.926 22 H 0.082 0.918 23 H 0.071 0.929 24 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.108 -4.194 0.234 7.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.144 4.144 3 Si 0.751 3.249 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.482 4.482 8 H 0.086 0.914 9 C 0.085 3.915 10 C -0.274 4.274 11 N -0.193 5.193 12 C -0.207 4.207 13 N -0.211 5.211 14 C -0.002 4.002 15 C -0.167 4.167 16 C -0.056 4.056 17 H 0.090 0.910 18 H 0.206 0.794 19 H 0.086 0.914 20 H 0.082 0.918 21 H 0.093 0.907 22 H 0.101 0.899 23 H 0.090 0.910 24 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.288 -4.328 0.237 6.837 hybrid contribution 1.323 1.216 -0.017 1.797 sum 6.611 -3.112 0.220 7.310 Atomic orbital electron populations 1.69585 1.07255 1.28626 1.37805 1.25639 0.94879 1.00677 0.93234 0.86083 0.79518 0.79802 0.79476 1.19281 1.20207 1.19291 1.18338 0.93736 0.88630 1.47482 0.91406 1.18856 0.92512 0.81139 0.98975 1.23422 0.93577 0.90374 1.20018 1.69095 1.26008 1.06609 1.17565 1.23242 0.85161 0.91750 1.20542 1.46044 1.06345 1.06947 1.61772 1.21755 0.85845 0.91723 1.00838 1.22605 0.96879 0.95558 1.01695 1.20154 0.93424 0.90998 1.01066 0.90962 0.79353 0.91364 0.91826 0.90694 0.89928 0.91044 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.76 10.35 55.56 0.57 -21.19 14 2 C 0.07 1.88 5.50 -17.28 -0.10 1.79 14 3 Si 0.93 19.41 29.56 -169.99 -5.03 14.39 14 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 14 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 14 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 14 7 C -0.45 -12.47 9.45 -38.21 -0.36 -12.83 14 8 H 0.07 1.79 7.85 -52.48 -0.41 1.38 14 9 C 0.20 5.68 6.97 -83.59 -0.58 5.10 14 10 C -0.13 -3.77 10.88 -16.64 -0.18 -3.95 14 11 N -0.47 -13.67 11.18 -9.43 -0.11 -13.78 14 12 C 0.05 1.17 8.57 -154.14 -1.32 -0.15 14 13 N -0.52 -13.16 3.67 -109.29 -0.40 -13.56 14 14 C 0.12 2.30 7.78 -3.06 -0.02 2.28 14 15 C -0.13 -1.94 7.17 -25.23 -0.18 -2.12 14 16 C -0.02 -0.31 6.86 -26.60 -0.18 -0.49 14 17 H 0.28 6.84 8.30 -40.82 -0.34 6.50 14 18 H 0.19 5.79 5.77 -52.49 -0.30 5.48 14 19 H 0.07 1.21 8.14 -51.93 -0.42 0.79 14 20 H 0.06 1.11 8.14 -51.93 -0.42 0.69 14 21 H 0.07 1.05 8.14 -51.93 -0.42 0.63 14 22 H 0.08 0.94 8.14 -51.93 -0.42 0.52 14 23 H 0.07 1.20 8.14 -51.93 -0.42 0.77 14 24 H 0.07 1.13 8.14 -51.93 -0.42 0.71 14 LS Contribution 210.01 15.07 3.16 3.16 Total: -1.00 -32.26 210.01 -7.10 -39.37 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -2.39 Total: 2.00 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -2.93 Total: -10.39 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 0.07 Total: -48.53 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.39 kcal Total LS contribution 3.16 Total: 3.16 kcal Total: -32.26 -7.10 -39.37 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213647449.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.081 kcal (2) G-P(sol) polarization free energy of solvation -32.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds