Wall clock time and date at job start Mon Mar 30 2020 02:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31029 * 1 3 3 Si 1.86799 * 120.00262 * 2 1 4 4 H 1.48498 * 109.46830 * 271.46230 * 3 2 1 5 5 H 1.48496 * 109.47092 * 31.46090 * 3 2 1 6 6 H 1.48503 * 109.47125 * 151.46147 * 3 2 1 7 7 C 1.39694 * 119.99475 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00283 * 344.02657 * 7 2 1 9 9 C 1.41604 * 119.99625 * 164.02129 * 7 2 1 10 10 C 1.41880 * 126.55637 * 341.56793 * 9 7 2 11 11 N 1.30318 * 108.04698 * 180.30081 * 10 9 7 12 12 N 1.39884 * 109.22921 * 359.58674 * 11 10 9 13 13 C 1.46499 * 125.67553 * 180.21588 * 12 11 10 14 14 C 1.53000 * 117.49676 * 163.86377 * 13 12 11 15 15 C 1.52999 * 60.00309 * 252.50961 * 14 13 12 16 16 C 1.34502 * 108.64684 * 0.42542 * 12 11 10 17 17 H 0.96998 * 119.99618 * 0.02562 * 1 2 3 18 18 H 1.08006 * 125.97954 * 0.04183 * 10 9 7 19 19 H 1.08996 * 115.54833 * 309.57487 * 13 12 11 20 20 H 1.08995 * 117.50042 * 0.02562 * 14 13 12 21 21 H 1.09000 * 117.49656 * 145.01925 * 14 13 12 22 22 H 1.09002 * 117.50282 * 252.51589 * 15 14 13 23 23 H 1.08998 * 117.51309 * 107.47960 * 15 14 13 24 24 H 1.07994 * 126.40535 * 179.75659 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2444 1.6177 0.0000 4 1 2.4609 2.0642 -1.3996 5 1 1.4577 2.6435 0.7307 6 1 3.5571 1.4313 0.6689 7 6 2.0087 -1.2099 0.0005 8 1 1.4999 -2.1270 0.2583 9 6 3.3837 -1.2337 -0.3370 10 6 4.1002 -0.2270 -1.0342 11 7 5.3365 -0.6213 -1.1545 12 7 5.4823 -1.8724 -0.5460 13 6 6.7248 -2.6446 -0.4673 14 6 6.7816 -3.7902 0.5452 15 6 7.5660 -2.5021 0.8027 16 6 4.2910 -2.2504 -0.0491 17 1 -0.4849 0.8401 -0.0004 18 1 3.6917 0.7017 -1.4045 19 1 7.2553 -2.7788 -1.4100 20 1 5.8945 -3.9696 1.1525 21 1 7.3495 -4.6786 0.2687 22 1 8.6500 -2.5430 0.6956 23 1 7.1952 -1.8336 1.5796 24 1 4.0779 -3.1702 0.4753 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213647858.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:20 Heat of formation + Delta-G solvation = 102.859987 kcal Electronic energy + Delta-G solvation = -10078.298178 eV Core-core repulsion = 8187.455269 eV Total energy + Delta-G solvation = -1890.842908 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.74312 -36.63831 -33.20348 -30.15564 -29.35704 -25.06076 -22.38401 -22.15674 -20.07138 -18.91017 -17.39961 -15.71575 -15.37285 -14.67154 -13.62919 -13.20361 -12.90362 -12.69525 -11.66979 -11.37569 -11.03968 -11.02510 -10.70827 -10.45409 -10.23362 -9.81477 -9.15622 -9.05198 -8.12565 -7.38354 -6.57472 -4.02645 2.89467 3.17591 3.30336 3.39687 3.44701 3.95274 3.99015 4.17985 4.87247 4.98592 5.16269 5.42990 5.65696 5.71766 5.96382 6.14237 6.17724 6.30889 6.92382 7.22043 7.41127 7.75334 8.34273 8.55396 8.83309 8.95752 9.19914 10.50099 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.075335 B = 0.012976 C = 0.011871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.585218 B = 2157.287029 C = 2358.114716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.082 3.918 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.292 1.292 6 H -0.252 1.252 7 C -0.441 4.441 8 H 0.083 0.917 9 C -0.027 4.027 10 C -0.030 4.030 11 N -0.307 5.307 12 N -0.355 5.355 13 C 0.105 3.895 14 C -0.174 4.174 15 C -0.188 4.188 16 C -0.105 4.105 17 H 0.277 0.723 18 H 0.161 0.839 19 H 0.122 0.878 20 H 0.104 0.896 21 H 0.105 0.895 22 H 0.100 0.900 23 H 0.098 0.902 24 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.989 -3.167 0.980 10.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.130 4.130 3 Si 0.726 3.274 4 H -0.199 1.199 5 H -0.219 1.219 6 H -0.176 1.176 7 C -0.475 4.475 8 H 0.101 0.899 9 C -0.037 4.037 10 C -0.215 4.215 11 N -0.130 5.130 12 N -0.143 5.143 13 C 0.000 4.000 14 C -0.212 4.212 15 C -0.227 4.227 16 C -0.246 4.246 17 H 0.087 0.913 18 H 0.177 0.823 19 H 0.140 0.860 20 H 0.122 0.878 21 H 0.123 0.877 22 H 0.119 0.881 23 H 0.117 0.883 24 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 10.925 -2.844 0.564 11.303 hybrid contribution -0.592 0.578 0.318 0.886 sum 10.334 -2.266 0.881 10.616 Atomic orbital electron populations 1.69745 1.07436 1.28988 1.41037 1.25746 0.94598 1.00489 0.92210 0.86667 0.80770 0.81286 0.78629 1.19887 1.21904 1.17568 1.18507 0.90847 0.95539 1.42597 0.89867 1.18294 0.94535 0.92057 0.98826 1.23844 0.92131 1.01266 1.04271 1.76455 1.20259 0.96153 1.20132 1.46832 1.06008 1.14349 1.47116 1.21245 0.87236 0.96802 0.94717 1.23285 1.03252 0.92560 1.02091 1.23414 0.98404 1.00208 1.00645 1.22180 0.84858 1.03985 1.13545 0.91288 0.82260 0.85998 0.87751 0.87657 0.88125 0.88342 0.83304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.01 13.94 55.54 0.77 -23.24 14 2 C 0.08 2.29 5.50 -17.35 -0.10 2.20 14 3 Si 0.90 21.59 24.51 -169.99 -4.17 17.42 14 4 H -0.27 -6.27 6.68 56.52 0.38 -5.89 14 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 14 6 H -0.25 -6.20 6.54 56.52 0.37 -5.83 14 7 C -0.44 -12.61 9.91 -37.76 -0.37 -12.99 14 8 H 0.08 2.48 8.06 -52.49 -0.42 2.05 14 9 C -0.03 -0.73 5.49 -106.83 -0.59 -1.31 14 10 C -0.03 -0.77 9.27 -16.80 -0.16 -0.93 14 11 N -0.31 -7.59 12.47 30.97 0.39 -7.20 14 12 N -0.36 -7.89 3.91 -53.91 -0.21 -8.10 14 13 C 0.10 1.73 7.12 -67.93 -0.48 1.25 14 14 C -0.17 -2.26 9.97 -26.73 -0.27 -2.53 14 15 C -0.19 -2.59 10.46 -26.73 -0.28 -2.87 14 16 C -0.11 -2.50 10.87 -16.00 -0.17 -2.67 14 17 H 0.28 7.22 8.30 -40.82 -0.34 6.88 14 18 H 0.16 3.97 4.22 -52.48 -0.22 3.75 14 19 H 0.12 1.80 8.14 -51.93 -0.42 1.37 14 20 H 0.10 1.44 6.98 -51.93 -0.36 1.08 14 21 H 0.11 1.05 8.14 -51.93 -0.42 0.63 14 22 H 0.10 1.10 8.14 -51.93 -0.42 0.67 14 23 H 0.10 1.52 8.14 -51.93 -0.42 1.10 14 24 H 0.15 3.15 7.21 -52.49 -0.38 2.77 14 LS Contribution 211.07 15.07 3.18 3.18 Total: -1.00 -30.86 211.07 -4.72 -35.58 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -2.27 Total: 2.20 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -2.42 Total: -19.84 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.95 Total: -38.54 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.17 Total: 17.42 kcal Total LS contribution 3.18 Total: 3.18 kcal Total: -30.86 -4.72 -35.58 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213647858.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.443 kcal (2) G-P(sol) polarization free energy of solvation -30.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds