Wall clock time and date at job start Mon Mar 30 2020 02:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30524 * 1 3 3 Si 1.86802 * 119.99696 * 2 1 4 4 H 1.48504 * 109.46966 * 239.99948 * 3 2 1 5 5 H 1.48500 * 109.47052 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47227 * 119.99967 * 3 2 1 7 7 C 1.40360 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99721 * 170.13681 * 7 2 1 9 9 C 1.41338 * 120.00052 * 350.13374 * 7 2 1 10 10 N 1.31274 * 119.99946 * 334.89070 * 9 7 2 11 11 C 1.48461 * 120.00112 * 154.89506 * 9 7 2 12 12 C 1.39261 * 119.72335 * 180.02562 * 11 9 7 13 13 C 1.38490 * 119.07426 * 180.02562 * 12 11 9 14 14 C 1.38712 * 118.49125 * 0.02562 * 13 12 11 15 15 C 1.38370 * 119.35240 * 0.27475 * 14 13 12 16 16 N 1.31669 * 120.88582 * 359.41929 * 15 14 13 17 17 H 0.96999 * 120.00677 * 0.02562 * 1 2 3 18 18 H 0.96995 * 120.00016 * 354.41009 * 10 9 7 19 19 H 1.08006 * 120.45978 * 0.03974 * 12 11 9 20 20 H 1.08004 * 120.75399 * 180.02562 * 13 12 11 21 21 H 1.08003 * 120.32241 * 179.97438 * 14 13 12 22 22 H 1.08001 * 119.55635 * 179.70180 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6178 0.0000 4 1 3.0929 1.6965 -1.2125 5 1 1.2741 2.7465 -0.0006 6 1 3.0929 1.6965 1.2125 7 6 2.0071 -1.2155 0.0005 8 1 3.0751 -1.2224 -0.1597 9 6 1.3161 -2.4304 0.2108 10 7 0.1819 -2.4346 0.8717 11 6 1.8731 -3.7019 -0.3156 12 6 1.1872 -4.8956 -0.1056 13 6 1.7192 -6.0739 -0.6021 14 6 2.9212 -6.0180 -1.2922 15 6 3.5518 -4.7976 -1.4585 16 7 3.0204 -3.6917 -0.9809 17 1 -0.4851 0.8400 -0.0004 18 1 -0.1414 -1.6189 1.2853 19 1 0.2532 -4.9022 0.4368 20 1 1.2099 -7.0149 -0.4552 21 1 3.3629 -6.9190 -1.6917 22 1 4.4901 -4.7510 -1.9911 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224191151.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:58 Heat of formation + Delta-G solvation = 46.684447 kcal Electronic energy + Delta-G solvation = -9533.359769 eV Core-core repulsion = 7667.392385 eV Total energy + Delta-G solvation = -1865.967384 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 176.064 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.22067 -34.97003 -31.91110 -31.68134 -29.39996 -26.06045 -23.26449 -22.54263 -19.64229 -17.01475 -15.90102 -15.18637 -14.99078 -14.28939 -13.25820 -13.19225 -12.70895 -12.47611 -11.53841 -11.21798 -10.94078 -10.65977 -10.36747 -9.77331 -9.18253 -8.80128 -8.62721 -7.67415 -7.47250 -6.38486 -4.50117 1.71349 2.00613 3.10830 3.16511 3.20966 4.00615 4.08950 4.71863 5.10382 5.36489 5.54499 5.63817 5.69967 5.92795 6.41461 6.48512 6.76813 6.89171 7.31079 7.50933 8.15636 8.28229 8.83929 8.91567 9.14623 10.39609 10.46462 Molecular weight = 176.06amu Principal moments of inertia in cm(-1) A = 0.072722 B = 0.012884 C = 0.011179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.934511 B = 2172.792074 C = 2504.054222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.478 4.478 8 H 0.080 0.920 9 C 0.295 3.705 10 N -0.785 5.785 11 C 0.199 3.801 12 C -0.147 4.147 13 C -0.092 4.092 14 C -0.199 4.199 15 C 0.088 3.912 16 N -0.465 5.465 17 H 0.279 0.721 18 H 0.339 0.661 19 H 0.142 0.858 20 H 0.124 0.876 21 H 0.122 0.878 22 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.336 -5.891 -1.751 7.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.148 4.148 3 Si 0.741 3.259 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.520 4.520 8 H 0.099 0.901 9 C 0.120 3.880 10 N -0.414 5.414 11 C 0.062 3.938 12 C -0.168 4.168 13 C -0.118 4.118 14 C -0.220 4.220 15 C -0.071 4.071 16 N -0.175 5.175 17 H 0.090 0.910 18 H 0.157 0.843 19 H 0.159 0.841 20 H 0.142 0.858 21 H 0.140 0.860 22 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.869 -5.743 -1.658 7.120 hybrid contribution 0.296 0.935 -0.050 0.982 sum 4.165 -4.808 -1.708 6.587 Atomic orbital electron populations 1.69530 1.07390 1.29086 1.38915 1.25883 0.94786 1.01189 0.92909 0.86255 0.79776 0.80125 0.79759 1.19093 1.20685 1.19146 1.20241 0.96820 0.90553 1.44364 0.90144 1.18724 0.90894 0.87424 0.90975 1.69397 1.15670 1.37729 1.18633 1.20641 0.88672 0.93794 0.90737 1.22314 1.01763 0.92366 1.00362 1.21482 0.95466 0.98284 0.96539 1.21996 0.97608 0.99201 1.03148 1.22679 0.99127 0.88081 0.97238 1.67688 1.11469 1.29929 1.08397 0.91034 0.84305 0.84058 0.85839 0.86005 0.83680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.69 11.07 55.57 0.62 -22.07 14 2 C 0.07 1.85 5.27 -17.31 -0.09 1.76 14 3 Si 0.92 20.17 29.57 -169.99 -5.03 15.15 14 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 14 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 14 6 H -0.27 -5.79 7.11 56.52 0.40 -5.38 14 7 C -0.48 -13.56 8.83 -37.61 -0.33 -13.89 14 8 H 0.08 2.24 7.64 -52.49 -0.40 1.84 14 9 C 0.30 8.32 6.67 -82.71 -0.55 7.77 14 10 N -0.78 -22.41 12.65 33.48 0.42 -21.99 14 11 C 0.20 4.90 6.73 -82.93 -0.56 4.34 14 12 C -0.15 -3.11 9.61 -39.11 -0.38 -3.49 14 13 C -0.09 -1.55 10.17 -39.31 -0.40 -1.95 14 14 C -0.20 -3.14 10.11 -39.36 -0.40 -3.54 14 15 C 0.09 1.58 11.18 -17.57 -0.20 1.38 14 16 N -0.46 -10.69 9.60 -9.76 -0.09 -10.79 14 17 H 0.28 7.10 8.29 -40.82 -0.34 6.76 14 18 H 0.34 9.94 6.51 -40.82 -0.27 9.67 14 19 H 0.14 3.02 7.55 -52.48 -0.40 2.62 14 20 H 0.12 1.64 8.06 -52.48 -0.42 1.22 14 21 H 0.12 1.45 8.06 -52.48 -0.42 1.03 14 22 H 0.15 2.08 8.06 -52.49 -0.42 1.65 14 LS Contribution 206.95 15.07 3.12 3.12 Total: -1.00 -30.47 206.95 -5.33 -35.80 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -1.47 Total: 8.40 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -2.90 Total: -7.62 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: 0.95 Total: -54.85 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.15 kcal Total LS contribution 3.12 Total: 3.12 kcal Total: -30.47 -5.33 -35.80 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224191151.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.486 kcal (2) G-P(sol) polarization free energy of solvation -30.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds