Wall clock time and date at job start Mon Mar 30 2020 02:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38524 * 119.83670 * 2 1 4 4 C 1.39291 * 120.42491 * 179.97438 * 3 2 1 5 5 N 1.39688 * 119.94964 * 179.97438 * 4 3 2 6 6 C 1.38315 * 120.09840 * 0.02562 * 4 3 2 7 7 C 1.40563 * 119.67472 * 359.97438 * 6 4 3 8 8 C 1.41408 * 120.20866 * 179.97438 * 7 6 4 9 9 H 1.07998 * 120.00164 * 204.44287 * 8 7 6 10 10 C 1.39935 * 119.99879 * 24.44184 * 8 7 6 11 11 N 1.30825 * 119.99973 * 17.87616 * 10 8 7 12 12 Si 1.86804 * 119.99648 * 197.87559 * 10 8 7 13 13 H 1.48497 * 109.46973 * 60.00400 * 12 10 8 14 14 H 1.48501 * 109.46697 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47071 * 299.99791 * 12 10 8 16 16 C 1.37648 * 119.84099 * 179.97438 * 2 1 3 17 17 H 1.08998 * 109.46983 * 90.00558 * 1 2 3 18 18 H 1.09001 * 109.46932 * 210.00152 * 1 2 3 19 19 H 1.09000 * 109.47178 * 330.00068 * 1 2 3 20 20 H 1.08005 * 119.78555 * 0.25007 * 3 2 1 21 21 H 0.96994 * 120.00377 * 0.02562 * 5 4 3 22 22 H 0.97002 * 119.99425 * 179.97438 * 5 4 3 23 23 H 1.08002 * 120.16521 * 179.97438 * 6 4 3 24 24 H 0.96999 * 119.99917 * 179.97438 * 11 10 8 25 25 H 1.08002 * 120.05324 * 0.04498 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.2016 0.0000 4 6 3.5890 1.2159 0.0005 5 7 4.2739 2.4334 0.0000 6 6 4.2949 0.0265 0.0005 7 6 3.5998 -1.1953 0.0005 8 6 4.3101 -2.4180 0.0000 9 1 3.8449 -3.3126 -0.3870 10 6 5.6157 -2.4689 0.5009 11 7 6.0571 -1.5111 1.2750 12 14 6.7282 -3.9046 0.0642 13 1 6.9067 -3.9622 -1.4089 14 1 8.0498 -3.7229 0.7167 15 1 6.1125 -5.1700 0.5383 16 6 2.1919 -1.1940 0.0005 17 1 -0.3633 -0.0001 -1.0277 18 1 -0.3633 -0.8900 0.5139 19 1 -0.3633 0.8900 0.5138 20 1 1.6500 2.1334 0.0041 21 1 3.7797 3.2679 -0.0004 22 1 5.2439 2.4441 0.0007 23 1 5.3749 0.0363 0.0005 24 1 6.9620 -1.5466 1.6226 25 1 1.6502 -2.1283 0.0002 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238447705.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:30 Heat of formation + Delta-G solvation = 2.317294 kcal Electronic energy + Delta-G solvation = -9946.691021 eV Core-core repulsion = 8116.914165 eV Total energy + Delta-G solvation = -1829.776856 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 177.085 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.70703 -33.99750 -33.38522 -30.52651 -27.80344 -25.45147 -25.08335 -20.43892 -19.83756 -16.99214 -15.57104 -15.15323 -14.48129 -14.32207 -13.07865 -12.75678 -12.62050 -11.97684 -11.50184 -11.33131 -11.16764 -10.93504 -10.52551 -10.43769 -9.62424 -9.45199 -9.31927 -8.72865 -7.16846 -6.68827 -6.13856 -4.26836 2.91769 3.11391 3.14920 3.23182 3.40271 4.00969 4.75089 5.04074 5.80815 6.10780 6.13178 6.41297 6.60777 6.63945 6.98899 7.17522 7.19963 7.45996 7.53205 7.94427 8.06829 8.19613 8.24884 8.56942 8.81900 8.99174 9.06527 9.17647 10.30336 Molecular weight = 177.08amu Principal moments of inertia in cm(-1) A = 0.051802 B = 0.014223 C = 0.011536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.392786 B = 1968.135273 C = 2426.653185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.039 4.039 3 C -0.300 4.300 4 C 0.215 3.785 5 N -0.895 5.895 6 C -0.238 4.238 7 C 0.141 3.859 8 C -0.466 4.466 9 H 0.076 0.924 10 C 0.078 3.922 11 N -0.793 5.793 12 Si 0.905 3.095 13 H -0.265 1.265 14 H -0.280 1.280 15 H -0.266 1.266 16 C -0.256 4.256 17 H 0.053 0.947 18 H 0.053 0.947 19 H 0.049 0.951 20 H 0.083 0.917 21 H 0.380 0.620 22 H 0.386 0.614 23 H 0.116 0.884 24 H 0.277 0.723 25 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.443 2.301 -1.515 3.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.039 4.039 3 C -0.323 4.323 4 C 0.114 3.886 5 N -0.435 5.435 6 C -0.263 4.263 7 C 0.138 3.862 8 C -0.496 4.496 9 H 0.094 0.906 10 C -0.140 4.140 11 N -0.419 5.419 12 Si 0.730 3.270 13 H -0.189 1.189 14 H -0.205 1.205 15 H -0.191 1.191 16 C -0.276 4.276 17 H 0.072 0.928 18 H 0.072 0.928 19 H 0.068 0.932 20 H 0.101 0.899 21 H 0.206 0.794 22 H 0.213 0.787 23 H 0.134 0.866 24 H 0.088 0.912 25 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.288 2.285 -1.364 2.956 hybrid contribution 0.798 -0.259 -0.053 0.841 sum -0.490 2.026 -1.417 2.520 Atomic orbital electron populations 1.20660 0.94032 1.00770 1.00462 1.19094 0.93330 0.93315 0.98202 1.19668 0.91721 0.95750 1.25144 1.17663 0.91030 0.85746 0.94112 1.42331 1.07912 1.05054 1.88227 1.20718 0.99188 0.89914 1.16437 1.17309 0.90577 0.92616 0.85720 1.19517 0.97588 0.95823 1.36635 0.90630 1.25883 0.98427 0.97030 0.92633 1.69866 1.17408 1.32024 1.22587 0.86435 0.78910 0.81809 0.79890 1.18929 1.20494 1.19090 1.20723 0.94236 0.95000 1.17689 0.92822 0.92841 0.93236 0.89876 0.79397 0.78740 0.86592 0.91184 0.89355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.90 10.00 36.00 0.36 -1.54 15 2 C -0.04 -0.91 5.87 -104.73 -0.61 -1.53 15 3 C -0.30 -7.06 9.55 -39.08 -0.37 -7.43 15 4 C 0.22 5.22 6.74 -83.86 -0.57 4.66 15 5 N -0.89 -17.37 9.09 32.37 0.29 -17.08 15 6 C -0.24 -6.45 8.54 -38.68 -0.33 -6.78 15 7 C 0.14 3.94 5.57 -106.85 -0.60 3.34 15 8 C -0.47 -12.85 9.05 -37.74 -0.34 -13.19 15 9 H 0.08 2.00 7.91 -52.49 -0.41 1.59 15 10 C 0.08 2.01 5.14 -17.35 -0.09 1.92 15 11 N -0.79 -21.14 10.96 55.55 0.61 -20.53 15 12 Si 0.90 19.18 29.60 -169.99 -5.03 14.15 15 13 H -0.26 -5.57 7.11 56.52 0.40 -5.16 15 14 H -0.28 -5.76 7.11 56.52 0.40 -5.35 15 15 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 16 C -0.26 -6.63 9.43 -38.83 -0.37 -7.00 15 17 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 18 H 0.05 0.93 8.08 -51.93 -0.42 0.51 15 19 H 0.05 0.83 8.08 -51.93 -0.42 0.41 15 20 H 0.08 1.76 8.06 -52.48 -0.42 1.34 15 21 H 0.38 6.26 8.84 -40.82 -0.36 5.90 15 22 H 0.39 6.95 8.84 -40.82 -0.36 6.59 15 23 H 0.12 3.22 6.15 -52.49 -0.32 2.90 15 24 H 0.28 6.74 8.30 -40.82 -0.34 6.40 15 25 H 0.09 2.17 8.06 -52.49 -0.42 1.75 15 LS Contribution 221.30 15.07 3.33 3.33 Total: -1.00 -29.06 221.30 -6.41 -35.47 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -2.70 Total: 12.19 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: -2.92 Total: -27.55 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.90 Total: -37.61 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -29.06 -6.41 -35.47 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238447705.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.790 kcal (2) G-P(sol) polarization free energy of solvation -29.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds