Wall clock time and date at job start Mon Mar 30 2020 02:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38970 * 120.70599 * 2 1 4 4 C 1.38753 * 119.55547 * 179.97438 * 3 2 1 5 5 N 1.31421 * 121.01229 * 0.02562 * 4 3 2 6 6 C 1.33610 * 121.51947 * 359.72675 * 5 4 3 7 7 C 1.41399 * 119.83220 * 180.26460 * 6 5 4 8 8 H 1.07997 * 120.00241 * 174.68737 * 7 6 5 9 9 C 1.40038 * 120.00130 * 354.68386 * 7 6 5 10 10 N 1.30742 * 119.99771 * 6.43900 * 9 7 6 11 11 Si 1.86796 * 120.00351 * 186.43969 * 9 7 6 12 12 H 1.48499 * 109.47372 * 94.98152 * 11 9 7 13 13 H 1.48500 * 109.47255 * 214.98655 * 11 9 7 14 14 H 1.48505 * 109.46632 * 334.98144 * 11 9 7 15 15 C 1.38150 * 120.70358 * 179.97438 * 2 1 3 16 16 C 1.50703 * 120.50728 * 359.97438 * 15 2 1 17 17 H 1.08997 * 109.46778 * 270.02242 * 1 2 3 18 18 H 1.08997 * 109.46895 * 30.01636 * 1 2 3 19 19 H 1.08997 * 109.46806 * 150.02010 * 1 2 3 20 20 H 1.08003 * 120.22046 * 0.02562 * 3 2 1 21 21 H 1.08003 * 119.48932 * 180.02562 * 4 3 2 22 22 H 0.96997 * 119.99979 * 179.97438 * 10 9 7 23 23 H 1.08998 * 109.47312 * 90.00352 * 16 15 2 24 24 H 1.08999 * 109.47050 * 209.99762 * 16 15 2 25 25 H 1.09002 * 109.47463 * 329.99918 * 16 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2167 1.1949 0.0000 4 6 3.6040 1.1670 0.0005 5 7 4.2583 0.0273 0.0005 6 6 3.6184 -1.1456 0.0055 7 6 4.3582 -2.3506 0.0110 8 1 3.8472 -3.2976 0.1015 9 6 5.7537 -2.3159 -0.1011 10 7 6.3826 -1.1698 -0.0841 11 14 6.7166 -3.9071 -0.2750 12 1 6.9619 -4.1826 -1.7134 13 1 8.0155 -3.7796 0.4332 14 1 5.9375 -5.0242 0.3171 15 6 2.2125 -1.1878 0.0005 16 6 1.4867 -2.5086 0.0017 17 1 -0.3633 0.0004 1.0277 18 1 -0.3633 0.8898 -0.5141 19 1 -0.3633 -0.8902 -0.5135 20 1 1.6919 2.1388 0.0004 21 1 4.1544 2.0962 0.0010 22 1 7.3492 -1.1459 -0.1613 23 1 1.3114 -2.8278 -1.0257 24 1 2.0919 -3.2553 0.5158 25 1 0.5319 -2.3981 0.5158 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238468126.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:54 Heat of formation + Delta-G solvation = -1.190336 kcal Electronic energy + Delta-G solvation = -10102.675755 eV Core-core repulsion = 8272.746797 eV Total energy + Delta-G solvation = -1829.928958 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 177.085 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.24181 -35.67112 -34.57917 -32.70779 -28.81621 -28.06234 -26.64636 -22.58066 -21.81337 -18.93769 -17.45859 -16.40689 -15.94682 -15.25106 -14.96805 -14.28755 -13.57236 -13.45433 -13.35948 -13.22805 -13.06768 -12.76005 -12.56812 -12.17915 -12.00077 -11.38393 -11.16079 -9.67452 -9.42682 -9.35699 -8.27240 -6.45770 0.91415 1.15279 1.40166 1.54022 1.55127 2.23415 2.86156 3.91648 4.23842 4.29821 4.53389 4.63743 4.84046 4.88554 4.91516 5.01709 5.05739 5.16893 5.26528 5.39843 5.67349 5.78223 6.03066 6.22025 6.36140 6.79918 7.02952 8.23755 8.48480 Molecular weight = 177.08amu Principal moments of inertia in cm(-1) A = 0.061314 B = 0.014985 C = 0.012160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.554027 B = 1868.071088 C = 2302.170065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.043 4.043 3 C -0.312 4.312 4 C 0.092 3.908 5 N -0.529 5.529 6 C 0.221 3.779 7 C -0.468 4.468 8 H 0.096 0.904 9 C 0.020 3.980 10 N -0.762 5.762 11 Si 0.987 3.013 12 H -0.265 1.265 13 H -0.269 1.269 14 H -0.251 1.251 15 C -0.266 4.266 16 C -0.073 4.073 17 H 0.075 0.925 18 H 0.072 0.928 19 H 0.072 0.928 20 H 0.122 0.878 21 H 0.132 0.868 22 H 0.277 0.723 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.437 -2.155 -0.202 5.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.049 4.049 3 C -0.335 4.335 4 C -0.072 4.072 5 N -0.243 5.243 6 C 0.095 3.905 7 C -0.499 4.499 8 H 0.114 0.886 9 C -0.201 4.201 10 N -0.385 5.385 11 Si 0.807 3.193 12 H -0.190 1.190 13 H -0.194 1.194 14 H -0.174 1.174 15 C -0.271 4.271 16 C -0.130 4.130 17 H 0.094 0.906 18 H 0.091 0.909 19 H 0.091 0.909 20 H 0.140 0.860 21 H 0.149 0.851 22 H 0.087 0.913 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.325 -2.071 -0.204 4.799 hybrid contribution -0.111 -0.109 -0.080 0.175 sum -4.435 -2.181 -0.284 4.950 Atomic orbital electron populations 1.20706 0.89390 1.02898 1.02486 1.20140 0.96932 0.92336 0.95472 1.21558 0.94994 0.97852 1.19112 1.22903 0.92337 0.96741 0.95174 1.68660 1.39026 0.97633 1.18953 1.19037 0.89741 0.92210 0.89490 1.20056 0.92301 0.93293 1.44287 0.88588 1.27082 0.99240 1.01090 0.92639 1.70269 1.09589 1.28377 1.30260 0.85135 0.77531 0.77416 0.79242 1.18961 1.19412 1.17444 1.20878 0.94445 0.96275 1.15465 1.20337 0.98595 0.93403 1.00706 0.90618 0.90877 0.90948 0.85987 0.85103 0.91287 0.92817 0.92935 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.14 9.28 71.24 0.66 -2.48 15 2 C -0.04 -1.89 5.91 -19.71 -0.12 -2.00 15 3 C -0.31 -14.20 9.83 22.57 0.22 -13.98 15 4 C 0.09 4.71 11.18 84.88 0.95 5.66 15 5 N -0.53 -31.23 7.89 -189.11 -1.49 -32.72 15 6 C 0.22 12.66 6.55 40.24 0.26 12.92 15 7 C -0.47 -25.94 8.70 23.49 0.20 -25.74 15 8 H 0.10 4.90 5.98 -2.91 -0.02 4.89 15 9 C 0.02 1.07 5.49 85.29 0.47 1.54 15 10 N -0.76 -42.95 11.49 21.84 0.25 -42.70 15 11 Si 0.99 39.04 29.56 68.60 2.03 41.07 15 12 H -0.26 -10.15 7.11 99.48 0.71 -9.45 15 13 H -0.27 -10.22 7.11 99.48 0.71 -9.52 15 14 H -0.25 -9.39 7.11 99.48 0.71 -8.69 15 15 C -0.27 -13.12 5.96 -19.29 -0.11 -13.23 15 16 C -0.07 -2.92 8.79 71.24 0.63 -2.29 15 17 H 0.08 2.17 8.14 -2.39 -0.02 2.15 15 18 H 0.07 2.05 8.10 -2.39 -0.02 2.03 15 19 H 0.07 2.11 6.81 -2.39 -0.02 2.09 15 20 H 0.12 4.69 8.06 -2.91 -0.02 4.67 15 21 H 0.13 6.01 8.06 -2.91 -0.02 5.98 15 22 H 0.28 14.08 8.29 -92.71 -0.77 13.31 15 23 H 0.05 2.00 8.14 -2.39 -0.02 1.98 15 24 H 0.05 2.13 6.27 -2.39 -0.01 2.12 15 25 H 0.07 2.29 6.80 -2.39 -0.02 2.27 15 Total: -1.00 -65.25 216.60 5.13 -60.12 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 1.18 Total: 13.83 kcal Atomic # 6 Polarization: -42.76 SS G_CDS: 3.16 Total: -39.60 kcal Atomic # 7 Polarization: -74.18 SS G_CDS: -1.24 Total: -75.43 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Total: -65.25 5.13 -60.12 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238468126.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.928 kcal (2) G-P(sol) polarization free energy of solvation -65.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds