Wall clock time and date at job start Mon Mar 30 2020 02:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30687 * 1 3 3 Si 1.86799 * 119.99892 * 2 1 4 4 H 1.48504 * 109.46652 * 239.99736 * 3 2 1 5 5 H 1.48497 * 109.47330 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47397 * 119.99949 * 3 2 1 7 7 C 1.40236 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00036 * 180.02562 * 7 2 1 9 9 C 1.39996 * 120.00405 * 0.02562 * 7 2 1 10 10 N 1.32986 * 125.95855 * 359.97438 * 9 7 2 11 11 C 1.32762 * 109.22174 * 179.72755 * 10 9 7 12 12 C 1.36219 * 108.61789 * 0.44652 * 11 10 9 13 13 C 1.50701 * 126.40135 * 179.82096 * 12 11 10 14 14 C 1.53001 * 117.51956 * 325.97714 * 13 12 11 15 15 C 1.52999 * 60.00190 * 107.47765 * 14 13 12 16 16 N 1.36409 * 107.19436 * 359.56559 * 12 11 10 17 17 H 0.97001 * 126.55701 * 180.24158 * 16 12 11 18 18 H 0.96996 * 120.00203 * 0.02562 * 1 2 3 19 19 H 1.07998 * 125.69345 * 180.26536 * 11 10 9 20 20 H 1.09002 * 115.55088 * 180.27323 * 13 12 11 21 21 H 1.09001 * 117.49733 * 214.97195 * 14 13 12 22 22 H 1.08995 * 117.49577 * 359.97438 * 14 13 12 23 23 H 1.09004 * 117.50150 * 252.51496 * 15 14 13 24 24 H 1.09004 * 117.51638 * 107.47550 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0946 1.6963 -1.2125 5 1 1.2759 2.7465 -0.0006 6 1 3.0946 1.6965 1.2124 7 6 2.0080 -1.2145 0.0005 8 1 3.0880 -1.2145 0.0010 9 6 1.3081 -2.4269 0.0005 10 7 -0.0145 -2.5651 0.0005 11 6 -0.3191 -3.8573 -0.0054 12 6 0.8376 -4.5767 0.0007 13 6 0.9565 -6.0790 0.0009 14 6 -0.1130 -6.8726 0.7541 15 6 -0.0973 -6.8711 -0.7758 16 7 1.8683 -3.6831 0.0007 17 1 2.8152 -3.8933 0.0011 18 1 -0.4850 0.8400 -0.0004 19 1 -1.3173 -4.2694 -0.0109 20 1 1.9738 -6.4701 0.0110 21 1 0.2008 -7.7858 1.2597 22 1 -0.9026 -6.3081 1.2499 23 1 -0.8766 -6.3055 -1.2867 24 1 0.2271 -7.7831 -1.2771 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238553750.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:08 Heat of formation + Delta-G solvation = 49.417183 kcal Electronic energy + Delta-G solvation = -9992.364395 eV Core-core repulsion = 8099.204033 eV Total energy + Delta-G solvation = -1893.160362 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.83196 -37.73698 -35.21128 -32.61609 -30.46113 -27.00860 -23.60749 -23.13172 -22.01039 -20.88529 -18.68269 -17.84494 -16.67516 -15.65862 -15.08096 -15.03226 -14.56377 -14.17353 -13.21944 -12.84709 -12.63999 -12.40149 -12.31152 -11.93958 -11.66370 -11.27069 -10.97177 -10.22591 -9.81947 -8.84107 -8.33281 -6.27976 1.36433 1.44300 1.58242 1.73578 2.27951 2.66979 2.93465 3.27952 3.62329 4.02564 4.13970 4.32509 4.53407 4.56219 4.83610 4.97246 5.09577 5.25143 5.36175 5.43624 5.77358 6.10844 6.29596 6.66000 6.99790 7.49980 8.25705 8.62959 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.119559 B = 0.010341 C = 0.009777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 234.137880 B = 2706.963035 C = 2863.072947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.029 3.971 3 Si 0.998 3.002 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.498 4.498 8 H 0.091 0.909 9 C 0.338 3.662 10 N -0.561 5.561 11 C -0.052 4.052 12 C -0.085 4.085 13 C -0.080 4.080 14 C -0.164 4.164 15 C -0.164 4.164 16 N -0.611 5.611 17 H 0.409 0.591 18 H 0.276 0.724 19 H 0.142 0.858 20 H 0.114 0.886 21 H 0.120 0.880 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.608 -7.200 -0.015 8.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.189 4.189 3 Si 0.818 3.182 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.538 4.538 8 H 0.109 0.891 9 C 0.092 3.908 10 N -0.284 5.284 11 C -0.203 4.203 12 C -0.199 4.199 13 C -0.099 4.099 14 C -0.201 4.201 15 C -0.202 4.202 16 N -0.219 5.219 17 H 0.246 0.754 18 H 0.086 0.914 19 H 0.159 0.841 20 H 0.132 0.868 21 H 0.138 0.862 22 H 0.099 0.901 23 H 0.099 0.901 24 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.741 -6.501 -0.012 7.055 hybrid contribution 1.008 0.013 -0.001 1.008 sum 3.750 -6.488 -0.013 7.493 Atomic orbital electron populations 1.70156 1.09035 1.28994 1.33815 1.26806 0.95629 1.04185 0.92319 0.85044 0.78178 0.75015 0.79945 1.18234 1.19762 1.18226 1.18560 0.94277 0.88387 1.52529 0.89101 1.20511 0.88143 0.85008 0.97150 1.71147 1.11871 1.16662 1.28728 1.22178 0.97029 0.91221 1.09906 1.20350 0.88273 0.91175 1.20083 1.20019 0.96487 0.85850 1.07575 1.23071 1.00639 1.01822 0.94604 1.23076 1.00864 1.01844 0.94380 1.43168 1.08062 1.06397 1.64294 0.75432 0.91368 0.84089 0.86788 0.86161 0.90099 0.90111 0.86166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -46.69 11.90 21.88 0.26 -46.43 14 2 C 0.03 1.60 5.50 85.35 0.47 2.07 14 3 Si 1.00 40.05 29.56 68.60 2.03 42.08 14 4 H -0.26 -9.84 7.11 99.48 0.71 -9.14 14 5 H -0.27 -10.55 7.11 99.48 0.71 -9.84 14 6 H -0.26 -9.84 7.11 99.48 0.71 -9.13 14 7 C -0.50 -28.04 9.46 23.18 0.22 -27.82 14 8 H 0.09 4.62 7.85 -2.91 -0.02 4.59 14 9 C 0.34 19.67 7.61 133.59 1.02 20.69 14 10 N -0.56 -34.51 9.41 -194.17 -1.83 -36.34 14 11 C -0.05 -2.76 10.92 84.08 0.92 -1.84 14 12 C -0.08 -3.89 6.93 41.38 0.29 -3.60 14 13 C -0.08 -2.67 6.33 -11.54 -0.07 -2.74 14 14 C -0.16 -4.55 10.05 30.59 0.31 -4.25 14 15 C -0.16 -4.56 10.05 30.60 0.31 -4.25 14 16 N -0.61 -29.56 6.25 -179.88 -1.12 -30.68 14 17 H 0.41 16.60 8.96 -92.71 -0.83 15.77 14 18 H 0.28 14.78 8.29 -92.71 -0.77 14.01 14 19 H 0.14 6.75 8.06 -2.91 -0.02 6.73 14 20 H 0.11 3.30 8.14 -2.39 -0.02 3.28 14 21 H 0.12 2.56 8.14 -2.39 -0.02 2.54 14 22 H 0.08 2.50 7.96 -2.39 -0.02 2.48 14 23 H 0.08 2.50 7.97 -2.39 -0.02 2.48 14 24 H 0.12 2.56 8.14 -2.38 -0.02 2.54 14 Total: -1.00 -69.97 218.80 3.17 -66.81 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 0.38 Total: 26.31 kcal Atomic # 6 Polarization: -25.20 SS G_CDS: 3.45 Total: -21.75 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -2.69 Total: -113.45 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.08 kcal Total: -69.97 3.17 -66.81 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238553750.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.224 kcal (2) G-P(sol) polarization free energy of solvation -69.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds