Wall clock time and date at job start Mon Mar 30 2020 02:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30962 * 1 3 3 Si 1.86799 * 120.00347 * 2 1 4 4 H 1.48503 * 109.47100 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47406 * 120.00031 * 3 2 1 6 6 H 1.48498 * 109.47304 * 240.00462 * 3 2 1 7 7 C 1.39843 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99698 * 154.51548 * 7 2 1 9 9 C 1.40885 * 120.00024 * 334.51905 * 7 2 1 10 10 C 1.40843 * 120.21874 * 334.41641 * 9 7 2 11 11 C 1.36201 * 120.03179 * 179.97438 * 10 9 7 12 12 C 1.39789 * 120.48551 * 0.02562 * 11 10 9 13 13 N 1.38955 * 119.78293 * 180.02562 * 12 11 10 14 14 C 1.39067 * 120.43429 * 0.02562 * 12 11 10 15 15 C 1.38335 * 119.96251 * 359.69262 * 14 12 11 16 16 N 1.38840 * 120.24239 * 180.32093 * 15 14 12 17 17 H 0.96997 * 120.00265 * 174.14396 * 1 2 3 18 18 H 1.08000 * 119.98531 * 0.02562 * 10 9 7 19 19 H 1.07996 * 119.75887 * 180.02562 * 11 10 9 20 20 H 0.97006 * 120.00341 * 0.02562 * 13 12 11 21 21 H 0.96999 * 120.00341 * 179.97438 * 13 12 11 22 22 H 1.08000 * 120.02065 * 180.02562 * 14 12 11 23 23 H 0.97001 * 120.00011 * 180.25368 * 16 15 14 24 24 H 0.96993 * 119.99530 * 0.26325 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2437 1.6177 0.0000 4 1 1.2788 2.7465 0.0006 5 1 3.0975 1.6963 1.2125 6 1 3.0974 1.6964 -1.2125 7 6 2.0088 -1.2111 0.0005 8 1 3.0100 -1.2567 -0.4019 9 6 1.4071 -2.3716 0.5260 10 6 0.3958 -2.2666 1.5006 11 6 -0.1836 -3.3910 2.0055 12 6 0.2179 -4.6551 1.5642 13 7 -0.3835 -5.7926 2.0889 14 6 1.2153 -4.7819 0.6034 15 6 1.8121 -3.6518 0.0739 16 7 2.8038 -3.7714 -0.8904 17 1 -0.4850 -0.8356 -0.0857 18 1 0.0790 -1.2940 1.8471 19 1 -0.9590 -3.3053 2.7524 20 1 -1.0799 -5.7079 2.7590 21 1 -0.1077 -6.6714 1.7847 22 1 1.5201 -5.7618 0.2670 23 1 3.2225 -2.9767 -1.2567 24 1 3.0778 -4.6495 -1.1979 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238585040.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:42 Heat of formation + Delta-G solvation = 10.653913 kcal Electronic energy + Delta-G solvation = -10148.325188 eV Core-core repulsion = 8253.483924 eV Total energy + Delta-G solvation = -1894.841264 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.05572 -34.66802 -33.50421 -31.42618 -28.04545 -27.45581 -24.02989 -21.00026 -20.31316 -17.58840 -16.31165 -16.05946 -14.83992 -14.35889 -13.89236 -13.19011 -12.70359 -12.17036 -12.06461 -11.51046 -11.01543 -10.81359 -10.28722 -10.19963 -9.75127 -9.33762 -8.80029 -8.41112 -6.92397 -6.74908 -6.29636 -3.84128 3.01858 3.13312 3.29532 3.44520 3.50094 4.24919 4.83405 4.91938 5.29181 5.74396 6.23535 6.46494 6.89879 7.09094 7.30599 7.34722 7.65671 7.91748 7.99434 8.22459 8.36643 8.66842 8.68808 8.83318 8.97180 9.18738 9.26127 10.42914 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.061401 B = 0.014140 C = 0.011984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.907317 B = 1979.707411 C = 2335.953558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.038 3.962 3 Si 1.060 2.940 4 H -0.278 1.278 5 H -0.279 1.279 6 H -0.282 1.282 7 C -0.539 4.539 8 H 0.063 0.937 9 C 0.016 3.984 10 C -0.151 4.151 11 C -0.201 4.201 12 C 0.134 3.866 13 N -0.895 5.895 14 C -0.242 4.242 15 C 0.155 3.845 16 N -0.881 5.881 17 H 0.294 0.706 18 H 0.106 0.894 19 H 0.085 0.915 20 H 0.383 0.617 21 H 0.380 0.620 22 H 0.088 0.912 23 H 0.393 0.607 24 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.941 -4.476 0.562 4.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.180 4.180 3 Si 0.886 3.114 4 H -0.203 1.203 5 H -0.205 1.205 6 H -0.208 1.208 7 C -0.570 4.570 8 H 0.081 0.919 9 C 0.010 3.990 10 C -0.172 4.172 11 C -0.225 4.225 12 C 0.034 3.966 13 N -0.437 5.437 14 C -0.269 4.269 15 C 0.052 3.948 16 N -0.421 5.421 17 H 0.108 0.892 18 H 0.124 0.876 19 H 0.103 0.897 20 H 0.208 0.792 21 H 0.206 0.794 22 H 0.106 0.894 23 H 0.222 0.778 24 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 1.691 -2.701 0.624 3.247 hybrid contribution 0.269 -2.133 -0.177 2.157 sum 1.960 -4.834 0.447 5.236 Atomic orbital electron populations 1.70484 1.08033 1.33672 1.32907 1.26637 0.95752 1.03485 0.92093 0.83719 0.75581 0.74728 0.77417 1.20315 1.20520 1.20756 1.19857 1.02456 0.94490 1.40220 0.91920 1.17171 0.96110 0.90648 0.95035 1.20448 1.01393 0.96667 0.98733 1.19736 1.05301 0.91478 1.06015 1.17035 0.95882 0.86375 0.97289 1.41881 1.46394 1.05367 1.50085 1.19461 1.05378 0.95522 1.06574 1.17656 0.92362 0.93339 0.91419 1.41939 1.44389 1.08774 1.47013 0.89241 0.87566 0.89669 0.79153 0.79405 0.89428 0.77789 0.79838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.13 12.32 55.54 0.68 -22.44 14 2 C 0.04 1.02 4.93 -17.32 -0.09 0.93 14 3 Si 1.06 22.83 30.00 -169.99 -5.10 17.73 14 4 H -0.28 -5.98 7.11 56.52 0.40 -5.58 14 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 14 6 H -0.28 -5.74 7.11 56.52 0.40 -5.34 14 7 C -0.54 -14.67 8.41 -37.98 -0.32 -14.99 14 8 H 0.06 1.64 6.75 -52.48 -0.35 1.28 14 9 C 0.02 0.44 5.31 -106.60 -0.57 -0.13 14 10 C -0.15 -4.03 7.88 -39.33 -0.31 -4.33 14 11 C -0.20 -4.85 9.81 -39.73 -0.39 -5.24 14 12 C 0.13 3.01 6.76 -83.75 -0.57 2.44 14 13 N -0.90 -15.61 9.05 32.47 0.29 -15.31 14 14 C -0.24 -5.53 9.71 -39.24 -0.38 -5.91 14 15 C 0.16 3.80 6.78 -83.34 -0.56 3.24 14 16 N -0.88 -18.16 8.98 32.69 0.29 -17.87 14 17 H 0.29 8.50 6.70 -40.82 -0.27 8.23 14 18 H 0.11 2.94 6.48 -52.49 -0.34 2.60 14 19 H 0.09 1.87 8.06 -52.49 -0.42 1.44 14 20 H 0.38 5.87 8.83 -40.82 -0.36 5.51 14 21 H 0.38 5.74 8.83 -40.82 -0.36 5.38 14 22 H 0.09 1.78 8.06 -52.49 -0.42 1.36 14 23 H 0.39 8.04 7.05 -40.82 -0.29 7.75 14 24 H 0.38 6.49 8.83 -40.82 -0.36 6.13 14 LS Contribution 210.84 15.07 3.18 3.18 Total: -1.00 -29.58 210.84 -5.81 -35.39 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: -1.98 Total: 23.32 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -3.18 Total: -23.99 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: 1.27 Total: -55.63 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.10 Total: 17.73 kcal Total LS contribution 3.18 Total: 3.18 kcal Total: -29.58 -5.81 -35.39 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238585040.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.041 kcal (2) G-P(sol) polarization free energy of solvation -29.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds