Wall clock time and date at job start Mon Mar 30 2020 02:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30962 * 1 3 3 Si 1.86799 * 120.00347 * 2 1 4 4 H 1.48503 * 109.47100 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47406 * 120.00031 * 3 2 1 6 6 H 1.48498 * 109.47304 * 240.00462 * 3 2 1 7 7 C 1.39843 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99698 * 154.51548 * 7 2 1 9 9 C 1.40885 * 120.00024 * 334.51905 * 7 2 1 10 10 C 1.40843 * 120.21874 * 334.41641 * 9 7 2 11 11 C 1.36201 * 120.03179 * 179.97438 * 10 9 7 12 12 C 1.39789 * 120.48551 * 0.02562 * 11 10 9 13 13 N 1.38955 * 119.78293 * 180.02562 * 12 11 10 14 14 C 1.39067 * 120.43429 * 0.02562 * 12 11 10 15 15 C 1.38335 * 119.96251 * 359.69262 * 14 12 11 16 16 N 1.38840 * 120.24239 * 180.32093 * 15 14 12 17 17 H 0.96997 * 120.00265 * 174.14396 * 1 2 3 18 18 H 1.08000 * 119.98531 * 0.02562 * 10 9 7 19 19 H 1.07996 * 119.75887 * 180.02562 * 11 10 9 20 20 H 0.97006 * 120.00341 * 0.02562 * 13 12 11 21 21 H 0.96999 * 120.00341 * 179.97438 * 13 12 11 22 22 H 1.08000 * 120.02065 * 180.02562 * 14 12 11 23 23 H 0.97001 * 120.00011 * 180.25368 * 16 15 14 24 24 H 0.96993 * 119.99530 * 0.26325 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2437 1.6177 0.0000 4 1 1.2788 2.7465 0.0006 5 1 3.0975 1.6963 1.2125 6 1 3.0974 1.6964 -1.2125 7 6 2.0088 -1.2111 0.0005 8 1 3.0100 -1.2567 -0.4019 9 6 1.4071 -2.3716 0.5260 10 6 0.3958 -2.2666 1.5006 11 6 -0.1836 -3.3910 2.0055 12 6 0.2179 -4.6551 1.5642 13 7 -0.3835 -5.7926 2.0889 14 6 1.2153 -4.7819 0.6034 15 6 1.8121 -3.6518 0.0739 16 7 2.8038 -3.7714 -0.8904 17 1 -0.4850 -0.8356 -0.0857 18 1 0.0790 -1.2940 1.8471 19 1 -0.9590 -3.3053 2.7524 20 1 -1.0799 -5.7079 2.7590 21 1 -0.1077 -6.6714 1.7847 22 1 1.5201 -5.7618 0.2670 23 1 3.2225 -2.9767 -1.2567 24 1 3.0778 -4.6495 -1.1979 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238585040.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:42 Heat of formation + Delta-G solvation = -10.865320 kcal Electronic energy + Delta-G solvation = -10149.258332 eV Core-core repulsion = 8253.483924 eV Total energy + Delta-G solvation = -1895.774408 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.91346 -36.44724 -35.36852 -33.21986 -29.87720 -29.32309 -25.94702 -22.89388 -22.15748 -19.53371 -18.01500 -17.79650 -16.45781 -16.25721 -15.61653 -14.94008 -14.61764 -14.04509 -13.93815 -13.37980 -12.83168 -12.56285 -11.95904 -11.91686 -11.63054 -11.24438 -10.70600 -10.29148 -8.95925 -8.49087 -8.17070 -5.83996 1.12070 1.25659 1.55394 1.71911 1.83242 2.47780 2.90802 3.32632 3.67825 3.77856 4.42784 4.61574 5.04666 5.22256 5.48596 5.53661 5.69829 5.98314 6.03857 6.26733 6.43450 6.79974 6.98091 7.13143 7.32988 7.38570 7.48260 8.37338 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.061401 B = 0.014140 C = 0.011984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.907317 B = 1979.707411 C = 2335.953558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C -0.005 4.005 3 Si 1.112 2.888 4 H -0.280 1.280 5 H -0.271 1.271 6 H -0.260 1.260 7 C -0.565 4.565 8 H 0.065 0.935 9 C -0.030 4.030 10 C -0.161 4.161 11 C -0.227 4.227 12 C 0.158 3.842 13 N -0.875 5.875 14 C -0.257 4.257 15 C 0.156 3.844 16 N -0.868 5.868 17 H 0.276 0.724 18 H 0.082 0.918 19 H 0.101 0.899 20 H 0.397 0.603 21 H 0.398 0.602 22 H 0.119 0.881 23 H 0.394 0.606 24 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.626 -5.933 0.584 6.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.216 4.216 3 Si 0.932 3.068 4 H -0.205 1.205 5 H -0.196 1.196 6 H -0.185 1.185 7 C -0.596 4.596 8 H 0.083 0.917 9 C -0.036 4.036 10 C -0.183 4.183 11 C -0.252 4.252 12 C 0.055 3.945 13 N -0.418 5.418 14 C -0.285 4.285 15 C 0.052 3.948 16 N -0.409 5.409 17 H 0.087 0.913 18 H 0.100 0.900 19 H 0.119 0.881 20 H 0.225 0.775 21 H 0.226 0.774 22 H 0.137 0.863 23 H 0.223 0.777 24 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 2.384 -4.237 0.641 4.904 hybrid contribution 0.026 -1.940 -0.133 1.945 sum 2.409 -6.177 0.508 6.650 Atomic orbital electron populations 1.70610 1.08905 1.32341 1.36253 1.28019 0.95798 1.06863 0.90911 0.83050 0.74602 0.70643 0.78508 1.20534 1.19614 1.18486 1.20050 1.02668 0.95418 1.41496 0.91735 1.17476 0.97641 0.92045 0.96477 1.20410 1.02001 0.96566 0.99323 1.19892 1.06382 0.91671 1.07220 1.17182 0.94529 0.87137 0.95619 1.41789 1.45780 1.04766 1.49486 1.19793 1.05481 0.96413 1.06766 1.17882 0.92448 0.93023 0.91476 1.41865 1.43163 1.10030 1.45842 0.91278 0.90028 0.88064 0.77537 0.77408 0.86293 0.77685 0.77627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.66 12.32 21.82 0.27 -49.39 14 2 C 0.00 -0.27 4.93 85.21 0.42 0.15 14 3 Si 1.11 46.50 30.00 68.60 2.06 48.55 14 4 H -0.28 -11.67 7.11 99.48 0.71 -10.96 14 5 H -0.27 -10.82 7.11 99.48 0.71 -10.11 14 6 H -0.26 -9.88 7.11 99.48 0.71 -9.17 14 7 C -0.56 -31.29 8.41 23.31 0.20 -31.09 14 8 H 0.06 3.40 6.75 -2.91 -0.02 3.38 14 9 C -0.03 -1.67 5.31 -21.14 -0.11 -1.79 14 10 C -0.16 -8.82 7.88 22.43 0.18 -8.64 14 11 C -0.23 -10.81 9.81 22.17 0.22 -10.59 14 12 C 0.16 6.68 6.76 38.59 0.26 6.94 14 13 N -0.88 -27.11 9.05 -51.18 -0.46 -27.58 14 14 C -0.26 -11.03 9.71 22.49 0.22 -10.81 14 15 C 0.16 7.48 6.78 38.91 0.26 7.75 14 16 N -0.87 -34.28 8.98 -50.49 -0.45 -34.73 14 17 H 0.28 16.72 6.70 -92.71 -0.62 16.10 14 18 H 0.08 4.75 6.48 -2.91 -0.02 4.74 14 19 H 0.10 4.36 8.06 -2.91 -0.02 4.33 14 20 H 0.40 10.64 8.83 -92.70 -0.82 9.82 14 21 H 0.40 10.13 8.83 -92.71 -0.82 9.32 14 22 H 0.12 4.32 8.06 -2.91 -0.02 4.29 14 23 H 0.39 15.68 7.05 -92.71 -0.65 15.02 14 24 H 0.40 12.53 8.83 -92.71 -0.82 11.72 14 Total: -1.00 -64.10 210.84 1.36 -62.74 By element: Atomic # 1 Polarization: 50.17 SS G_CDS: -1.70 Total: 48.47 kcal Atomic # 6 Polarization: -49.71 SS G_CDS: 1.64 Total: -48.07 kcal Atomic # 7 Polarization: -111.05 SS G_CDS: -0.65 Total: -111.70 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.06 Total: 48.55 kcal Total: -64.10 1.36 -62.74 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238585040.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.877 kcal (2) G-P(sol) polarization free energy of solvation -64.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds