Wall clock time and date at job start Mon Mar 30 2020 02:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30556 * 1 3 3 Si 1.86798 * 119.99877 * 2 1 4 4 H 1.48502 * 109.46733 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47482 * 299.99928 * 3 2 1 6 6 H 1.48500 * 109.47074 * 60.00234 * 3 2 1 7 7 C 1.40356 * 119.99646 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99272 * 180.02562 * 7 2 1 9 9 C 1.41086 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.40832 * 119.63748 * 180.02562 * 9 7 2 11 11 C 1.36755 * 119.27647 * 180.02562 * 10 9 7 12 12 C 1.40626 * 118.55234 * 359.97438 * 11 10 9 13 13 C 1.46885 * 120.38732 * 179.97438 * 12 11 10 14 14 O 1.21295 * 119.99645 * 179.97438 * 13 12 11 15 15 C 1.40415 * 119.22224 * 0.02562 * 12 11 10 16 16 N 1.31103 * 120.65257 * 0.02562 * 15 12 11 17 17 H 0.96993 * 119.99856 * 0.02562 * 1 2 3 18 18 H 1.08003 * 120.35813 * 0.27124 * 10 9 7 19 19 H 1.07997 * 120.71941 * 180.02562 * 11 10 9 20 20 H 1.07993 * 119.99989 * 0.02562 * 13 12 11 21 21 H 1.08004 * 119.67173 * 179.97438 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2395 1.6177 0.0000 4 1 3.6995 1.3463 -0.0006 5 1 1.8808 2.3964 -1.2124 6 1 1.8808 2.3964 1.2125 7 6 2.0073 -1.2156 -0.0005 8 1 3.0872 -1.2155 -0.0001 9 6 1.3018 -2.4374 -0.0005 10 6 2.0136 -3.6526 -0.0005 11 6 1.3223 -4.8325 -0.0011 12 6 -0.0833 -4.7881 -0.0011 13 6 -0.8660 -6.0310 -0.0022 14 8 -2.0780 -5.9844 -0.0017 15 6 -0.7297 -3.5416 -0.0010 16 7 -0.0362 -2.4290 -0.0015 17 1 -0.4849 0.8400 -0.0004 18 1 3.0936 -3.6525 0.0039 19 1 1.8445 -5.7779 -0.0007 20 1 -0.3623 -6.9863 -0.0026 21 1 -1.8089 -3.4990 -0.0014 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238678395.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:32 Heat of formation + Delta-G solvation = -12.760907 kcal Electronic energy + Delta-G solvation = -9593.327907 eV Core-core repulsion = 7627.064117 eV Total energy + Delta-G solvation = -1966.263790 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 177.053 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.60900 -37.18039 -33.90549 -30.96647 -30.26792 -26.51821 -23.05188 -21.90722 -20.00131 -17.78144 -15.99975 -15.29847 -14.81972 -14.29343 -13.56469 -13.24008 -12.84493 -12.29877 -12.08937 -11.35046 -11.29449 -11.15969 -10.78638 -10.20970 -9.62262 -8.88550 -8.47994 -7.83346 -7.70586 -6.69420 -4.86808 1.96972 2.84891 2.92848 2.97769 2.98197 3.66782 3.70776 4.56528 5.36365 5.72129 5.92323 6.00382 6.43242 6.56207 6.71119 6.81286 7.18897 7.33336 7.45728 7.78471 7.93630 8.31557 8.55682 8.63187 9.85118 9.99911 Molecular weight = 177.05amu Principal moments of inertia in cm(-1) A = 0.094449 B = 0.011671 C = 0.010425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 296.385841 B = 2398.628958 C = 2685.173702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.686 5.686 2 C 0.059 3.941 3 Si 0.915 3.085 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.393 4.393 8 H 0.092 0.908 9 C 0.253 3.747 10 C -0.278 4.278 11 C -0.015 4.015 12 C -0.404 4.404 13 C 0.389 3.611 14 O -0.521 6.521 15 C 0.197 3.803 16 N -0.498 5.498 17 H 0.281 0.719 18 H 0.103 0.897 19 H 0.102 0.898 20 H 0.068 0.932 21 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.027 -0.541 0.003 4.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.305 5.305 2 C -0.170 4.170 3 Si 0.738 3.262 4 H -0.180 1.180 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.421 4.421 8 H 0.110 0.890 9 C 0.132 3.868 10 C -0.300 4.300 11 C -0.038 4.038 12 C -0.411 4.411 13 C 0.256 3.744 14 O -0.402 6.402 15 C 0.025 3.975 16 N -0.211 5.211 17 H 0.092 0.908 18 H 0.121 0.879 19 H 0.120 0.880 20 H 0.084 0.916 21 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.888 0.472 0.002 2.926 hybrid contribution 1.011 -0.188 0.001 1.028 sum 3.899 0.283 0.004 3.909 Atomic orbital electron populations 1.70059 1.07616 1.28822 1.23983 1.26329 0.95080 1.01839 0.93778 0.86130 0.80832 0.80218 0.78997 1.18008 1.19396 1.19392 1.20066 0.94897 0.89547 1.37600 0.88957 1.18809 0.88799 0.92068 0.87165 1.21458 0.98976 0.93619 1.15964 1.20790 0.92962 0.96905 0.93167 1.20891 0.94650 0.96327 1.29222 1.23347 0.88502 0.92209 0.70350 1.90396 1.17707 1.90875 1.41225 1.22921 0.99139 0.87625 0.87823 1.68824 1.06872 1.26678 1.18699 0.90770 0.87879 0.87957 0.91628 0.85253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.38 11.44 55.57 0.64 -16.75 14 2 C 0.06 1.40 5.50 -17.30 -0.10 1.31 14 3 Si 0.92 17.15 29.56 -169.99 -5.03 12.12 14 4 H -0.26 -4.67 7.11 56.52 0.40 -4.27 14 5 H -0.27 -4.98 7.11 56.52 0.40 -4.58 14 6 H -0.27 -4.98 7.11 56.52 0.40 -4.58 14 7 C -0.39 -9.84 9.13 -37.71 -0.34 -10.18 14 8 H 0.09 2.11 7.85 -52.49 -0.41 1.70 14 9 C 0.25 6.68 6.55 -84.95 -0.56 6.12 14 10 C -0.28 -6.48 9.76 -39.14 -0.38 -6.86 14 11 C -0.02 -0.33 9.87 -39.22 -0.39 -0.71 14 12 C -0.40 -9.24 5.90 -104.68 -0.62 -9.86 14 13 C 0.39 7.94 11.46 34.23 0.39 8.33 14 14 O -0.52 -12.15 17.18 5.54 0.10 -12.05 14 15 C 0.20 5.01 10.77 -17.04 -0.18 4.82 14 16 N -0.50 -13.68 7.83 -10.76 -0.08 -13.76 14 17 H 0.28 6.33 8.29 -40.82 -0.34 5.99 14 18 H 0.10 2.15 8.06 -52.48 -0.42 1.73 14 19 H 0.10 1.78 8.06 -52.49 -0.42 1.36 14 20 H 0.07 1.08 8.06 -52.49 -0.42 0.66 14 21 H 0.13 3.19 7.65 -52.48 -0.40 2.79 14 LS Contribution 204.24 15.07 3.08 3.08 Total: -1.00 -28.91 204.24 -4.69 -33.60 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -1.22 Total: 0.79 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -2.17 Total: -7.03 kcal Atomic # 7 Polarization: -31.06 SS G_CDS: 0.55 Total: -30.51 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.10 Total: -12.05 kcal Atomic # 14 Polarization: 17.15 SS G_CDS: -5.03 Total: 12.12 kcal Total LS contribution 3.08 Total: 3.08 kcal Total: -28.91 -4.69 -33.60 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238678395.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.841 kcal (2) G-P(sol) polarization free energy of solvation -28.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds