Wall clock time and date at job start Mon Mar 30 2020 02:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30556 * 1 3 3 Si 1.86798 * 119.99877 * 2 1 4 4 H 1.48502 * 109.46733 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47482 * 299.99928 * 3 2 1 6 6 H 1.48500 * 109.47074 * 60.00234 * 3 2 1 7 7 C 1.40356 * 119.99646 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99272 * 180.02562 * 7 2 1 9 9 C 1.41086 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.40832 * 119.63748 * 180.02562 * 9 7 2 11 11 C 1.36755 * 119.27647 * 180.02562 * 10 9 7 12 12 C 1.40626 * 118.55234 * 359.97438 * 11 10 9 13 13 C 1.46885 * 120.38732 * 179.97438 * 12 11 10 14 14 O 1.21295 * 119.99645 * 179.97438 * 13 12 11 15 15 C 1.40415 * 119.22224 * 0.02562 * 12 11 10 16 16 N 1.31103 * 120.65257 * 0.02562 * 15 12 11 17 17 H 0.96993 * 119.99856 * 0.02562 * 1 2 3 18 18 H 1.08003 * 120.35813 * 0.27124 * 10 9 7 19 19 H 1.07997 * 120.71941 * 180.02562 * 11 10 9 20 20 H 1.07993 * 119.99989 * 0.02562 * 13 12 11 21 21 H 1.08004 * 119.67173 * 179.97438 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2395 1.6177 0.0000 4 1 3.6995 1.3463 -0.0006 5 1 1.8808 2.3964 -1.2124 6 1 1.8808 2.3964 1.2125 7 6 2.0073 -1.2156 -0.0005 8 1 3.0872 -1.2155 -0.0001 9 6 1.3018 -2.4374 -0.0005 10 6 2.0136 -3.6526 -0.0005 11 6 1.3223 -4.8325 -0.0011 12 6 -0.0833 -4.7881 -0.0011 13 6 -0.8660 -6.0310 -0.0022 14 8 -2.0780 -5.9844 -0.0017 15 6 -0.7297 -3.5416 -0.0010 16 7 -0.0362 -2.4290 -0.0015 17 1 -0.4849 0.8400 -0.0004 18 1 3.0936 -3.6525 0.0039 19 1 1.8445 -5.7779 -0.0007 20 1 -0.3623 -6.9863 -0.0026 21 1 -1.8089 -3.4990 -0.0014 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238678395.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:32 Heat of formation + Delta-G solvation = -31.404327 kcal Electronic energy + Delta-G solvation = -9594.136346 eV Core-core repulsion = 7627.064117 eV Total energy + Delta-G solvation = -1967.072229 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 177.053 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.41432 -38.96400 -35.69238 -32.79452 -32.11059 -28.32635 -24.84811 -23.72687 -21.74580 -19.58505 -17.76857 -17.00579 -16.59975 -15.96176 -15.33804 -15.01697 -14.56474 -13.97088 -13.95016 -13.05899 -12.90683 -12.79827 -12.52823 -11.82684 -11.33923 -10.60415 -10.30497 -9.70728 -9.54442 -8.47133 -6.73940 0.20442 1.13563 1.39085 1.41272 1.56723 1.97265 2.14658 2.79103 3.83632 3.84497 4.10434 4.34514 4.70787 4.80682 5.00392 5.03023 5.37095 5.55082 5.69115 5.98862 6.10636 6.52069 6.77147 6.91846 8.01600 8.23531 Molecular weight = 177.05amu Principal moments of inertia in cm(-1) A = 0.094449 B = 0.011671 C = 0.010425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 296.385841 B = 2398.628958 C = 2685.173702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.734 5.734 2 C 0.015 3.985 3 Si 0.998 3.002 4 H -0.245 1.245 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.424 4.424 8 H 0.107 0.893 9 C 0.217 3.783 10 C -0.293 4.293 11 C -0.004 4.004 12 C -0.411 4.411 13 C 0.401 3.599 14 O -0.551 6.551 15 C 0.167 3.833 16 N -0.535 5.535 17 H 0.287 0.713 18 H 0.125 0.875 19 H 0.155 0.845 20 H 0.134 0.866 21 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.666 -1.486 0.003 5.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.354 5.354 2 C -0.210 4.210 3 Si 0.816 3.184 4 H -0.167 1.167 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.453 4.453 8 H 0.125 0.875 9 C 0.095 3.905 10 C -0.315 4.315 11 C -0.027 4.027 12 C -0.417 4.417 13 C 0.269 3.731 14 O -0.433 6.433 15 C -0.003 4.003 16 N -0.248 5.248 17 H 0.098 0.902 18 H 0.143 0.857 19 H 0.173 0.827 20 H 0.150 0.850 21 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.520 -0.505 0.003 4.548 hybrid contribution 0.449 -0.048 0.001 0.452 sum 4.969 -0.553 0.004 5.000 Atomic orbital electron populations 1.70159 1.09602 1.30242 1.25438 1.27361 0.95766 1.05485 0.92415 0.84920 0.79650 0.74810 0.78983 1.16745 1.18968 1.18958 1.20509 0.95790 0.90187 1.38770 0.87467 1.19363 0.88866 0.94118 0.88113 1.21726 1.00195 0.93355 1.16194 1.21255 0.92224 0.98473 0.90746 1.21329 0.95986 0.96526 1.27893 1.23970 0.87726 0.93230 0.68193 1.90403 1.19449 1.91319 1.42159 1.23043 0.99041 0.89007 0.89222 1.68734 1.08035 1.28040 1.20034 0.90167 0.85662 0.82703 0.85035 0.86243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -38.50 11.44 21.89 0.25 -38.25 14 2 C 0.01 0.70 5.50 85.40 0.47 1.17 14 3 Si 1.00 35.05 29.56 68.60 2.03 37.08 14 4 H -0.24 -8.01 7.11 99.48 0.71 -7.30 14 5 H -0.27 -9.04 7.11 99.48 0.71 -8.33 14 6 H -0.26 -9.03 7.11 99.48 0.71 -8.33 14 7 C -0.42 -21.49 9.13 23.48 0.21 -21.28 14 8 H 0.11 4.86 7.85 -2.91 -0.02 4.84 14 9 C 0.22 11.61 6.55 40.18 0.26 11.88 14 10 C -0.29 -13.23 9.76 22.56 0.22 -13.01 14 11 C 0.00 -0.18 9.87 22.51 0.22 0.05 14 12 C -0.41 -18.08 5.90 -19.90 -0.12 -18.20 14 13 C 0.40 15.02 11.46 70.09 0.80 15.83 14 14 O -0.55 -24.76 17.18 -3.08 -0.05 -24.81 14 15 C 0.17 8.70 10.77 85.33 0.92 9.62 14 16 N -0.53 -30.34 7.83 -187.96 -1.47 -31.82 14 17 H 0.29 13.42 8.29 -92.71 -0.77 12.65 14 18 H 0.13 4.96 8.06 -2.91 -0.02 4.94 14 19 H 0.16 4.47 8.06 -2.91 -0.02 4.45 14 20 H 0.13 3.42 8.06 -2.91 -0.02 3.40 14 21 H 0.12 6.19 7.65 -2.91 -0.02 6.17 14 Total: -1.00 -64.27 204.24 4.98 -59.28 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 1.24 Total: 12.47 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 2.99 Total: -13.95 kcal Atomic # 7 Polarization: -68.84 SS G_CDS: -1.22 Total: -70.06 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.05 Total: -24.81 kcal Atomic # 14 Polarization: 35.05 SS G_CDS: 2.03 Total: 37.08 kcal Total: -64.27 4.98 -59.28 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238678395.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.876 kcal (2) G-P(sol) polarization free energy of solvation -64.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds