Wall clock time and date at job start Mon Mar 30 2020 02:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 109.46882 * 2 1 4 4 C 1.37743 * 119.49172 * 125.02080 * 3 2 1 5 5 C 1.41037 * 118.85635 * 179.97438 * 4 3 2 6 6 C 1.41501 * 121.03069 * 179.97438 * 5 4 3 7 7 H 1.08006 * 119.99998 * 203.17545 * 6 5 4 8 8 C 1.40047 * 120.00164 * 23.17258 * 6 5 4 9 9 N 1.30729 * 119.99803 * 17.22146 * 8 6 5 10 10 Si 1.86801 * 120.00182 * 197.22040 * 8 6 5 11 11 H 1.48492 * 109.47179 * 59.99990 * 10 8 6 12 12 H 1.48506 * 109.47003 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46836 * 299.99976 * 10 8 6 14 14 C 1.41071 * 117.93960 * 0.02562 * 5 4 3 15 15 C 1.37699 * 118.85999 * 359.97438 * 14 5 4 16 16 N 1.32011 * 119.49644 * 304.99646 * 3 2 1 17 17 H 1.09000 * 109.47080 * 60.00562 * 1 2 3 18 18 H 1.08999 * 109.47176 * 179.97438 * 1 2 3 19 19 H 1.08990 * 109.47451 * 299.99784 * 1 2 3 20 20 H 1.09004 * 109.47443 * 240.00090 * 2 1 3 21 21 H 1.09000 * 109.47080 * 119.99437 * 2 1 3 22 22 H 1.08000 * 120.57660 * 359.97438 * 4 3 2 23 23 H 0.97001 * 120.00207 * 179.97438 * 9 8 6 24 24 H 1.08000 * 120.57356 * 179.97438 * 14 5 4 25 25 H 1.08004 * 119.49294 * 179.97438 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.9070 1.8309 0.9819 5 6 3.3690 3.1634 0.9688 6 6 4.2678 3.6335 1.9553 7 1 4.3266 4.6898 2.1729 8 6 5.0810 2.7292 2.6498 9 7 5.2680 1.5239 2.1794 10 14 5.8986 3.2453 4.2481 11 1 4.8575 3.6239 5.2369 12 1 6.7008 2.1149 4.7813 13 1 6.7881 4.4075 3.9963 14 6 2.9064 4.0132 -0.0578 15 6 2.0320 3.5091 -0.9945 16 7 1.6276 2.2533 -0.9413 17 1 -0.3633 0.5137 -0.8900 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3634 0.5137 0.8899 20 1 1.8934 -0.5138 -0.8900 21 1 1.8933 -0.5137 0.8900 22 1 3.2334 1.1439 1.7486 23 1 5.8315 0.8976 2.6601 24 1 3.2324 5.0416 -0.1082 25 1 1.6710 4.1509 -1.7846 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000256001587.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:28 Heat of formation + Delta-G solvation = -12.329172 kcal Electronic energy + Delta-G solvation = -9963.676019 eV Core-core repulsion = 8133.264045 eV Total energy + Delta-G solvation = -1830.411974 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 177.085 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.26818 -36.13590 -34.65283 -32.40158 -30.22220 -27.90850 -24.69415 -23.59604 -21.73779 -19.08586 -17.43086 -16.35465 -16.15417 -15.89275 -15.08198 -14.55035 -14.24201 -14.00630 -13.31607 -12.97856 -12.75899 -12.66910 -12.48836 -11.98125 -11.89013 -11.53854 -11.23468 -9.97199 -9.82104 -9.36035 -8.71565 -6.58425 0.86540 0.99344 1.37136 1.49456 1.56740 2.16816 2.72911 3.67264 3.86080 4.21655 4.43038 4.57443 4.73859 4.89866 4.98494 5.06457 5.08580 5.20350 5.29311 5.47529 5.51181 5.61017 5.92860 6.21136 6.52159 6.79185 6.81503 7.74921 8.22657 Molecular weight = 177.08amu Principal moments of inertia in cm(-1) A = 0.055213 B = 0.013620 C = 0.011549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.000850 B = 2055.305059 C = 2423.847662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.063 4.063 3 C 0.106 3.894 4 C -0.238 4.238 5 C 0.095 3.905 6 C -0.492 4.492 7 H 0.082 0.918 8 C 0.037 3.963 9 N -0.813 5.813 10 Si 0.990 3.010 11 H -0.259 1.259 12 H -0.264 1.264 13 H -0.257 1.257 14 C -0.300 4.300 15 C 0.099 3.901 16 N -0.581 5.581 17 H 0.052 0.948 18 H 0.078 0.922 19 H 0.039 0.961 20 H 0.073 0.927 21 H 0.070 0.930 22 H 0.114 0.886 23 H 0.293 0.707 24 H 0.111 0.889 25 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.956 -1.404 1.667 2.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.101 4.101 3 C -0.027 4.027 4 C -0.261 4.261 5 C 0.088 3.912 6 C -0.522 4.522 7 H 0.100 0.900 8 C -0.180 4.180 9 N -0.438 5.438 10 Si 0.809 3.191 11 H -0.184 1.184 12 H -0.188 1.188 13 H -0.181 1.181 14 C -0.323 4.323 15 C -0.055 4.055 16 N -0.297 5.297 17 H 0.072 0.928 18 H 0.097 0.903 19 H 0.059 0.941 20 H 0.091 0.909 21 H 0.088 0.912 22 H 0.132 0.868 23 H 0.104 0.896 24 H 0.129 0.871 25 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.421 -1.955 1.047 3.283 hybrid contribution 1.182 0.671 1.147 1.778 sum -1.239 -1.284 2.194 2.828 Atomic orbital electron populations 1.21537 0.93489 1.02036 1.01354 1.20356 0.97402 0.90278 1.02018 1.21236 0.93779 0.96363 0.91279 1.22074 1.03033 0.98340 1.02625 1.18283 0.89803 0.92312 0.90834 1.19897 1.18739 0.95704 1.17880 0.89970 1.26903 0.95558 0.94010 1.01564 1.69814 1.29495 1.06990 1.37542 0.85145 0.78409 0.79237 0.76299 1.18364 1.18798 1.18133 1.22090 1.08914 1.01222 1.00060 1.22402 0.93992 0.92080 0.97061 1.67255 1.30427 1.04713 1.27281 0.92841 0.90266 0.94149 0.90882 0.91163 0.86834 0.89597 0.87073 0.82817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.17 9.77 71.98 0.70 -3.47 15 2 C -0.06 -2.44 6.33 29.85 0.19 -2.25 15 3 C 0.11 5.20 6.17 42.42 0.26 5.46 15 4 C -0.24 -12.93 8.40 22.84 0.19 -12.74 15 5 C 0.10 5.31 5.61 -21.09 -0.12 5.20 15 6 C -0.49 -26.58 9.12 23.51 0.21 -26.37 15 7 H 0.08 4.23 7.90 -2.91 -0.02 4.21 15 8 C 0.04 1.84 5.20 85.30 0.44 2.28 15 9 N -0.81 -41.91 10.90 21.84 0.24 -41.67 15 10 Si 0.99 37.13 29.59 68.60 2.03 39.16 15 11 H -0.26 -9.55 7.11 99.48 0.71 -8.84 15 12 H -0.26 -9.26 7.11 99.48 0.71 -8.55 15 13 H -0.26 -9.31 7.11 99.48 0.71 -8.61 15 14 C -0.30 -15.24 9.91 22.84 0.23 -15.01 15 15 C 0.10 4.66 11.16 84.53 0.94 5.60 15 16 N -0.58 -28.48 9.85 -184.41 -1.82 -30.29 15 17 H 0.05 1.83 7.94 -2.39 -0.02 1.82 15 18 H 0.08 2.04 8.14 -2.39 -0.02 2.02 15 19 H 0.04 1.36 8.14 -2.39 -0.02 1.34 15 20 H 0.07 2.69 8.14 -2.38 -0.02 2.67 15 21 H 0.07 2.62 7.86 -2.39 -0.02 2.60 15 22 H 0.11 6.30 6.05 -2.91 -0.02 6.28 15 23 H 0.29 13.50 8.29 -92.71 -0.77 12.73 15 24 H 0.11 5.18 8.06 -2.91 -0.02 5.16 15 25 H 0.15 5.98 8.06 -2.91 -0.02 5.95 15 Total: -1.00 -59.99 221.91 4.68 -55.32 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 1.17 Total: 18.79 kcal Atomic # 6 Polarization: -44.36 SS G_CDS: 3.05 Total: -41.30 kcal Atomic # 7 Polarization: -70.38 SS G_CDS: -1.58 Total: -71.96 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 2.03 Total: 39.16 kcal Total: -59.99 4.68 -55.32 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000256001587.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.988 kcal (2) G-P(sol) polarization free energy of solvation -59.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds