Wall clock time and date at job start Mon Mar 30 2020 02:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00097 * 2 1 4 4 H 1.48506 * 109.47360 * 270.00516 * 3 2 1 5 5 H 1.48500 * 109.47213 * 30.00340 * 3 2 1 6 6 H 1.48499 * 109.47177 * 150.00658 * 3 2 1 7 7 C 1.37881 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99740 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99831 * 179.97438 * 7 2 1 10 10 F 1.39899 * 109.47347 * 60.00296 * 9 7 2 11 11 F 1.39899 * 109.47185 * 299.99621 * 9 7 2 12 12 C 1.53003 * 109.46728 * 179.97438 * 9 7 2 13 13 C 1.53786 * 113.61503 * 85.86370 * 12 9 7 14 14 C 1.54049 * 86.98426 * 140.01654 * 13 12 9 15 15 C 1.53781 * 113.61337 * 183.47164 * 12 9 7 16 16 H 0.97006 * 119.99817 * 359.97438 * 1 2 3 17 17 H 1.09002 * 112.85017 * 314.66753 * 12 9 7 18 18 H 1.08992 * 113.61675 * 254.61398 * 13 12 9 19 19 H 1.09000 * 113.60973 * 25.51686 * 13 12 9 20 20 H 1.09005 * 113.62125 * 220.02158 * 14 13 12 21 21 H 1.09003 * 113.61268 * 89.11946 * 14 13 12 22 22 H 1.08999 * 113.61567 * 334.48261 * 15 12 9 23 23 H 1.09000 * 113.61379 * 105.30384 * 15 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 9 3.9783 -0.5348 1.1411 11 9 3.9774 -0.5343 -1.1435 12 6 4.0215 -2.6365 -0.0010 13 6 4.1305 -3.2516 -1.4063 14 6 5.4465 -3.8973 -0.9329 15 6 5.5529 -2.7485 0.0838 16 1 -0.4850 0.8401 0.0004 17 1 3.4971 -3.2708 0.7137 18 1 3.3442 -3.9726 -1.6296 19 1 4.2660 -2.5132 -2.1966 20 1 6.2338 -3.8875 -1.6869 21 1 5.3118 -4.8764 -0.4730 22 1 6.0766 -1.8730 -0.3000 23 1 5.9142 -3.0624 1.0631 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259045761.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:47 Heat of formation + Delta-G solvation = -103.549101 kcal Electronic energy + Delta-G solvation = -10932.578565 eV Core-core repulsion = 8609.407379 eV Total energy + Delta-G solvation = -2323.171186 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 176.071 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.54101 -47.40456 -39.24666 -34.99172 -30.65122 -26.88068 -26.38501 -22.91148 -20.38862 -19.37916 -18.07068 -17.75826 -16.89007 -16.11819 -15.52983 -14.84738 -14.53249 -14.41790 -13.92194 -13.35845 -13.12293 -13.03235 -12.85131 -12.58258 -12.09452 -11.61001 -11.38457 -11.19180 -11.05308 -10.57735 -8.60341 -6.85759 1.26994 1.27609 1.43290 2.17915 2.75559 3.33224 3.65275 3.74448 3.90732 3.97272 4.45089 4.67309 4.81029 4.86582 4.95089 5.02787 5.09850 5.18655 5.37942 5.61633 5.90092 6.31022 6.96124 8.52638 Molecular weight = 176.07amu Principal moments of inertia in cm(-1) A = 0.069792 B = 0.018434 C = 0.016848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.097512 B = 1518.564745 C = 1661.503328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.045 3.955 3 Si 0.929 3.071 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.242 1.242 7 C -0.589 4.589 8 H 0.072 0.928 9 C 0.361 3.639 10 F -0.233 7.233 11 F -0.230 7.230 12 C -0.144 4.144 13 C -0.129 4.129 14 C -0.117 4.117 15 C -0.135 4.135 16 H 0.277 0.723 17 H 0.106 0.894 18 H 0.072 0.928 19 H 0.076 0.924 20 H 0.086 0.914 21 H 0.100 0.900 22 H 0.072 0.928 23 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.031 -4.466 -1.069 11.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.159 4.159 3 Si 0.752 3.248 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.165 1.165 7 C -0.626 4.626 8 H 0.090 0.910 9 C 0.325 3.675 10 F -0.214 7.214 11 F -0.212 7.212 12 C -0.164 4.164 13 C -0.167 4.167 14 C -0.154 4.154 15 C -0.172 4.172 16 H 0.087 0.913 17 H 0.124 0.876 18 H 0.090 0.910 19 H 0.094 0.906 20 H 0.105 0.895 21 H 0.118 0.882 22 H 0.091 0.909 23 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.883 -4.337 -1.064 10.844 hybrid contribution -0.322 1.088 0.057 1.136 sum 9.561 -3.249 -1.007 10.148 Atomic orbital electron populations 1.69979 1.07637 1.29188 1.47614 1.25746 0.95730 1.03075 0.91352 0.86195 0.80409 0.78865 0.79296 1.19617 1.20581 1.16545 1.21599 0.89130 0.95554 1.56279 0.90981 1.19097 0.91663 0.87279 0.69445 1.92831 1.90921 1.84116 1.53534 1.92719 1.90935 1.83862 1.53654 1.23446 0.98324 0.92925 1.01657 1.22904 0.99196 0.99782 0.94799 1.22790 0.96596 0.97684 0.98295 1.22922 0.93303 0.99810 1.01171 0.91338 0.87618 0.90960 0.90564 0.89549 0.88187 0.90903 0.89847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.76 13.96 21.45 0.30 -55.46 14 2 C 0.05 2.69 5.47 84.66 0.46 3.15 14 3 Si 0.93 46.95 25.99 68.60 1.78 48.73 14 4 H -0.27 -13.38 7.11 99.48 0.71 -12.67 14 5 H -0.28 -13.45 7.11 99.48 0.71 -12.74 14 6 H -0.24 -12.12 5.49 99.48 0.55 -11.58 14 7 C -0.59 -34.13 9.20 25.60 0.24 -33.89 14 8 H 0.07 4.41 7.99 -2.91 -0.02 4.39 14 9 C 0.36 17.96 1.17 29.85 0.03 18.00 14 10 F -0.23 -11.86 13.98 44.97 0.63 -11.23 14 11 F -0.23 -11.49 13.51 44.97 0.61 -10.88 14 12 C -0.14 -5.69 3.31 -10.26 -0.03 -5.72 14 13 C -0.13 -4.37 7.53 31.21 0.23 -4.13 14 14 C -0.12 -2.96 8.09 31.21 0.25 -2.71 14 15 C -0.13 -4.19 7.39 31.12 0.23 -3.96 14 16 H 0.28 15.74 8.31 -92.70 -0.77 14.97 14 17 H 0.11 4.09 8.13 -2.39 -0.02 4.07 14 18 H 0.07 2.33 8.14 -2.39 -0.02 2.31 14 19 H 0.08 2.76 7.05 -2.39 -0.02 2.74 14 20 H 0.09 1.86 8.14 -2.38 -0.02 1.84 14 21 H 0.10 2.12 8.14 -2.39 -0.02 2.10 14 22 H 0.07 2.37 8.00 -2.39 -0.02 2.35 14 23 H 0.08 2.28 8.14 -2.39 -0.02 2.26 14 Total: -1.00 -63.82 201.34 5.77 -58.05 By element: Atomic # 1 Polarization: -0.98 SS G_CDS: 1.03 Total: 0.05 kcal Atomic # 6 Polarization: -30.68 SS G_CDS: 1.42 Total: -29.27 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: 0.30 Total: -55.46 kcal Atomic # 9 Polarization: -23.35 SS G_CDS: 1.24 Total: -22.11 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.78 Total: 48.73 kcal Total: -63.82 5.77 -58.05 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259045761.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.496 kcal (2) G-P(sol) polarization free energy of solvation -63.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds