Wall clock time and date at job start Mon Mar 30 2020 02:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31375 * 1 3 3 Si 1.86809 * 119.99549 * 2 1 4 4 H 1.48501 * 109.47087 * 270.27530 * 3 2 1 5 5 H 1.48497 * 109.47017 * 30.27679 * 3 2 1 6 6 H 1.48496 * 109.46733 * 150.28001 * 3 2 1 7 7 C 1.38925 * 120.00520 * 180.27974 * 2 1 3 8 8 H 1.07999 * 120.00209 * 179.72531 * 7 2 1 9 9 N 1.37032 * 119.99551 * 359.71942 * 7 2 1 10 10 N 1.40090 * 126.12961 * 359.69295 * 9 7 2 11 11 C 1.30873 * 109.16235 * 179.83063 * 10 9 7 12 12 C 1.40425 * 108.90708 * 0.44147 * 11 10 9 13 13 N 1.38096 * 145.50154 * 179.74101 * 12 11 10 14 14 H 0.97006 * 125.64619 * 359.92156 * 13 12 11 15 15 C 1.36522 * 108.70755 * 179.97438 * 13 12 11 16 16 C 1.34833 * 109.16382 * 0.02562 * 15 13 12 17 17 C 1.37731 * 126.12450 * 180.02562 * 9 7 2 18 18 H 0.96990 * 119.99957 * 359.72540 * 1 2 3 19 19 H 1.08006 * 125.54513 * 180.15622 * 11 10 9 20 20 H 1.07993 * 125.41774 * 179.97438 * 15 13 12 21 21 H 1.08001 * 126.02589 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6179 0.0000 4 1 2.4893 2.0499 -1.4001 5 1 1.4480 2.6510 0.7059 6 1 3.5481 1.4386 0.6941 7 6 2.0085 -1.2030 -0.0059 8 1 3.0885 -1.2030 -0.0104 9 7 1.3234 -2.3898 -0.0059 10 7 -0.0695 -2.5394 0.0058 11 6 -0.3646 -3.8144 -0.0018 12 6 0.8270 -4.5573 -0.0085 13 7 1.3790 -5.8231 -0.0139 14 1 0.8824 -6.6564 -0.0129 15 6 2.7393 -5.7076 -0.0197 16 6 3.0726 -4.4011 -0.0177 17 6 1.8808 -3.6492 -0.0108 18 1 -0.4849 0.8400 0.0040 19 1 -1.3624 -4.2280 0.0016 20 1 3.4374 -6.5316 -0.0244 21 1 4.0759 -4.0015 -0.0207 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259470967.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:40 Heat of formation + Delta-G solvation = 101.791328 kcal Electronic energy + Delta-G solvation = -9910.915273 eV Core-core repulsion = 7981.911591 eV Total energy + Delta-G solvation = -1929.003681 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 177.060 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.34633 -38.71669 -35.17993 -32.58691 -30.60596 -28.61751 -26.70223 -22.62807 -21.62101 -21.01556 -19.62245 -17.56790 -16.65911 -15.84477 -15.76867 -15.10955 -14.45437 -13.81128 -13.57368 -13.45842 -12.88085 -12.72612 -12.29036 -12.01060 -11.28081 -10.89814 -10.51805 -8.82231 -8.55091 -8.38881 -6.02753 1.14287 1.38452 1.51870 1.56147 2.09236 2.31275 2.39039 2.43848 3.03423 3.17635 4.33608 4.50695 4.58009 4.87154 4.99489 5.21517 5.36677 5.78314 5.97170 6.12596 6.44885 6.83042 7.18283 7.63252 7.74652 8.63077 Molecular weight = 177.06amu Principal moments of inertia in cm(-1) A = 0.078076 B = 0.014352 C = 0.012175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.540793 B = 1950.504008 C = 2299.200690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C -0.010 4.010 3 Si 1.015 2.985 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.352 4.352 8 H 0.119 0.881 9 N -0.194 5.194 10 N -0.270 5.270 11 C -0.057 4.057 12 C -0.091 4.091 13 N -0.559 5.559 14 H 0.426 0.574 15 C 0.076 3.924 16 C -0.240 4.240 17 C -0.053 4.053 18 H 0.274 0.726 19 H 0.184 0.816 20 H 0.223 0.777 21 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.039 -7.200 -0.012 8.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.218 4.218 3 Si 0.834 3.166 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.483 4.483 8 H 0.137 0.863 9 N 0.030 4.970 10 N -0.099 5.099 11 C -0.238 4.238 12 C -0.205 4.205 13 N -0.167 5.167 14 H 0.265 0.735 15 C -0.057 4.057 16 C -0.270 4.270 17 C -0.178 4.178 18 H 0.083 0.917 19 H 0.201 0.799 20 H 0.239 0.761 21 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.284 -5.929 -0.001 7.315 hybrid contribution 0.060 -0.251 -0.013 0.258 sum 4.344 -6.180 -0.014 7.553 Atomic orbital electron populations 1.70376 1.07918 1.28570 1.40027 1.26693 0.96628 1.03637 0.94891 0.84655 0.78148 0.74598 0.79157 1.18926 1.19656 1.17549 1.20244 0.92270 0.81624 1.54174 0.86347 1.44039 1.02205 1.02953 1.47783 1.77802 0.91780 1.16140 1.24153 1.23046 0.97082 0.89770 1.13886 1.18939 0.93994 0.86396 1.21195 1.40763 1.05675 1.04441 1.65786 0.73526 1.22352 0.83409 0.97145 1.02747 1.19920 0.95087 0.92220 1.19758 1.19783 0.97682 0.85762 1.14533 0.91686 0.79939 0.76085 0.84451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -50.53 11.81 21.66 0.26 -50.27 14 2 C -0.01 -0.55 5.50 84.93 0.47 -0.08 14 3 Si 1.02 42.01 29.55 68.60 2.03 44.04 14 4 H -0.26 -10.48 7.11 99.48 0.71 -9.77 14 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 14 6 H -0.25 -9.73 7.11 99.48 0.71 -9.02 14 7 C -0.35 -20.91 10.25 84.05 0.86 -20.05 14 8 H 0.12 6.49 7.83 -2.91 -0.02 6.47 14 9 N -0.19 -11.85 3.76 -183.78 -0.69 -12.54 14 10 N -0.27 -16.54 10.34 -56.63 -0.59 -17.12 14 11 C -0.06 -2.93 12.00 85.37 1.02 -1.91 14 12 C -0.09 -4.35 8.09 38.90 0.31 -4.03 14 13 N -0.56 -18.98 6.15 -187.32 -1.15 -20.13 14 14 H 0.43 10.41 8.96 -92.70 -0.83 9.58 14 15 C 0.08 2.35 11.88 83.18 0.99 3.33 14 16 C -0.24 -9.95 10.82 22.14 0.24 -9.71 14 17 C -0.05 -2.84 7.63 39.08 0.30 -2.54 14 18 H 0.27 15.08 8.31 -92.72 -0.77 14.31 14 19 H 0.18 7.77 8.06 -2.91 -0.02 7.74 14 20 H 0.22 3.90 8.06 -2.91 -0.02 3.88 14 21 H 0.14 5.15 8.06 -2.91 -0.02 5.12 14 Total: -1.00 -77.32 198.39 4.47 -72.85 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.43 Total: 18.17 kcal Atomic # 6 Polarization: -39.18 SS G_CDS: 4.19 Total: -34.98 kcal Atomic # 7 Polarization: -97.89 SS G_CDS: -2.17 Total: -100.07 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -77.32 4.47 -72.85 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259470967.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.637 kcal (2) G-P(sol) polarization free energy of solvation -77.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds