Wall clock time and date at job start Mon Mar 30 2020 01:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99741 * 3 2 1 5 5 H 1.48488 * 109.47487 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47026 * 150.00561 * 3 2 1 7 7 C 1.37874 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99767 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 H 1.09002 * 112.49493 * 314.66680 * 10 9 7 12 12 S 1.81424 * 113.14760 * 84.44170 * 10 9 7 13 13 C 1.81507 * 73.11598 * 143.85068 * 12 10 9 14 14 C 1.53039 * 89.90352 * 331.42464 * 13 12 10 15 15 H 1.09001 * 113.15531 * 148.10633 * 14 13 12 16 16 O 1.42899 * 113.15426 * 277.60506 * 14 13 12 17 17 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 18 18 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 19 19 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 20 20 H 1.09006 * 113.18016 * 216.15449 * 13 12 10 21 21 H 1.08999 * 113.14939 * 86.69201 * 13 12 10 22 22 H 0.96696 * 114.00587 * 280.37389 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 1 3.4933 -3.2656 0.7167 12 16 4.1062 -3.3632 -1.6601 13 6 5.5234 -4.0101 -0.7286 14 6 5.5440 -2.7364 0.1195 15 1 5.8834 -2.9072 1.1411 16 8 6.2293 -1.6525 -0.5111 17 1 -0.4850 0.8401 0.0004 18 1 3.8753 -0.6796 0.8894 19 1 3.8746 -0.6807 -0.8905 20 1 6.4181 -4.1330 -1.3390 21 1 5.2854 -4.9045 -0.1528 22 1 7.1926 -1.7033 -0.4430 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259516208.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:03 Heat of formation + Delta-G solvation = -29.260277 kcal Electronic energy + Delta-G solvation = -8476.184936 eV Core-core repulsion = 6737.387021 eV Total energy + Delta-G solvation = -1738.797916 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 174.046 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.91309 -33.75423 -32.38823 -29.76259 -24.90130 -21.71967 -20.40893 -17.78376 -16.67530 -15.43335 -14.36218 -14.16521 -14.03000 -13.14318 -12.65329 -12.36331 -11.67047 -11.35096 -11.01422 -10.65554 -10.19491 -9.84398 -9.41663 -9.26622 -9.09503 -8.50005 -7.05911 -6.01595 -4.00158 2.36927 2.66170 3.36420 3.42541 3.48041 4.30148 4.49270 4.65807 5.20551 5.33782 5.48424 5.60933 5.69764 6.08070 6.38527 7.18868 7.39663 7.74353 7.85953 8.52564 9.01503 9.60077 11.11652 Molecular weight = 174.05amu Principal moments of inertia in cm(-1) A = 0.065318 B = 0.015558 C = 0.013583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.570800 B = 1799.325635 C = 2060.921019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.069 3.931 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.524 4.524 8 H 0.072 0.928 9 C 0.005 3.995 10 C -0.019 4.019 11 H 0.113 0.887 12 S -0.270 6.270 13 C -0.133 4.133 14 C 0.095 3.905 15 H 0.081 0.919 16 O -0.525 6.525 17 H 0.263 0.737 18 H 0.029 0.971 19 H 0.033 0.967 20 H 0.089 0.911 21 H 0.101 0.899 22 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.775 -5.011 1.444 13.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.132 4.132 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.188 1.188 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.033 4.033 10 C -0.148 4.148 11 H 0.131 0.869 12 S -0.045 6.045 13 C -0.283 4.283 14 C 0.033 3.967 15 H 0.099 0.901 16 O -0.329 6.329 17 H 0.073 0.927 18 H 0.047 0.953 19 H 0.052 0.948 20 H 0.108 0.892 21 H 0.120 0.880 22 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 11.331 -4.754 0.009 12.288 hybrid contribution 1.297 0.604 1.069 1.785 sum 12.627 -4.151 1.077 13.336 Atomic orbital electron populations 1.69917 1.06305 1.26890 1.51022 1.24977 0.94719 0.99144 0.94392 0.86770 0.80342 0.83491 0.78721 1.20181 1.21452 1.18799 1.21120 0.89206 0.94627 1.51236 0.91007 1.19484 0.96995 0.88956 0.97886 1.24295 0.93807 1.04088 0.92576 0.86899 1.88981 1.34817 1.60597 1.20080 1.24983 1.00859 1.01763 1.00647 1.22500 0.94285 0.85197 0.94701 0.90097 1.86700 1.22084 1.44950 1.79155 0.92734 0.95294 0.94836 0.89216 0.88032 0.78184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.55 13.96 55.43 0.77 -27.78 14 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 14 3 Si 0.88 22.51 27.47 -169.99 -4.67 17.84 14 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 14 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 14 6 H -0.26 -6.47 6.54 56.52 0.37 -6.10 14 7 C -0.52 -15.40 9.65 -34.44 -0.33 -15.73 14 8 H 0.07 2.27 7.99 -52.48 -0.42 1.86 14 9 C 0.00 0.12 3.29 -27.88 -0.09 0.03 14 10 C -0.02 -0.39 3.41 -26.71 -0.09 -0.48 14 11 H 0.11 2.19 8.13 -51.93 -0.42 1.77 14 12 S -0.27 -5.50 24.09 -107.50 -2.59 -8.09 14 13 C -0.13 -1.88 7.79 37.18 0.29 -1.59 14 14 C 0.09 1.44 4.83 -26.69 -0.13 1.31 14 15 H 0.08 0.98 8.14 -51.93 -0.42 0.56 14 16 O -0.53 -8.23 12.49 -35.23 -0.44 -8.67 14 17 H 0.26 7.77 8.31 -40.82 -0.34 7.43 14 18 H 0.03 0.71 7.20 -51.93 -0.37 0.34 14 19 H 0.03 0.88 7.26 -51.93 -0.38 0.51 14 20 H 0.09 1.10 8.14 -51.93 -0.42 0.68 14 21 H 0.10 1.22 8.14 -51.93 -0.42 0.80 14 22 H 0.37 3.55 9.12 45.56 0.42 3.97 14 LS Contribution 205.63 15.07 3.10 3.10 Total: -1.00 -33.86 205.63 -5.89 -39.75 By element: Atomic # 1 Polarization: -0.06 SS G_CDS: -1.61 Total: -1.67 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -0.45 Total: -14.49 kcal Atomic # 7 Polarization: -28.55 SS G_CDS: 0.77 Total: -27.78 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -0.44 Total: -8.67 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.67 Total: 17.84 kcal Atomic # 16 Polarization: -5.50 SS G_CDS: -2.59 Total: -8.09 kcal Total LS contribution 3.10 Total: 3.10 kcal Total: -33.86 -5.89 -39.75 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259516208.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.492 kcal (2) G-P(sol) polarization free energy of solvation -33.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds