Wall clock time and date at job start Mon Mar 30 2020 01:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99741 * 3 2 1 5 5 H 1.48488 * 109.47487 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47026 * 150.00561 * 3 2 1 7 7 C 1.37874 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99767 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 H 1.09002 * 112.49493 * 314.66680 * 10 9 7 12 12 S 1.81424 * 113.14760 * 84.44170 * 10 9 7 13 13 C 1.81507 * 73.11598 * 143.85068 * 12 10 9 14 14 C 1.53039 * 89.90352 * 331.42464 * 13 12 10 15 15 H 1.09001 * 113.15531 * 148.10633 * 14 13 12 16 16 O 1.42899 * 113.15426 * 277.60506 * 14 13 12 17 17 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 18 18 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 19 19 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 20 20 H 1.09006 * 113.18016 * 216.15449 * 13 12 10 21 21 H 1.08999 * 113.14939 * 86.69201 * 13 12 10 22 22 H 0.96696 * 114.00587 * 280.37389 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 1 3.4933 -3.2656 0.7167 12 16 4.1062 -3.3632 -1.6601 13 6 5.5234 -4.0101 -0.7286 14 6 5.5440 -2.7364 0.1195 15 1 5.8834 -2.9072 1.1411 16 8 6.2293 -1.6525 -0.5111 17 1 -0.4850 0.8401 0.0004 18 1 3.8753 -0.6796 0.8894 19 1 3.8746 -0.6807 -0.8905 20 1 6.4181 -4.1330 -1.3390 21 1 5.2854 -4.9045 -0.1528 22 1 7.1926 -1.7033 -0.4430 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259516208.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:03 Heat of formation + Delta-G solvation = -55.814016 kcal Electronic energy + Delta-G solvation = -8477.336393 eV Core-core repulsion = 6737.387021 eV Total energy + Delta-G solvation = -1739.949372 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 174.046 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.16630 -35.53473 -34.17231 -31.60110 -26.70851 -23.23518 -22.05718 -19.24104 -18.68549 -16.88206 -16.27661 -15.66060 -15.38310 -14.74292 -14.62662 -13.93471 -13.28994 -13.04295 -12.79444 -12.29275 -11.88821 -11.66049 -11.48835 -10.94893 -10.81713 -10.48787 -8.65301 -8.32567 -6.36848 1.10392 1.14989 1.33797 1.35776 1.48216 2.33794 3.03462 3.19021 3.48248 4.01297 4.38645 4.40801 4.58861 4.66900 4.78151 5.17391 5.40111 5.59583 6.19961 6.68758 7.03830 7.27278 8.84314 Molecular weight = 174.05amu Principal moments of inertia in cm(-1) A = 0.065318 B = 0.015558 C = 0.013583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.570800 B = 1799.325635 C = 2060.921019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.952 3.048 4 H -0.276 1.276 5 H -0.279 1.279 6 H -0.241 1.241 7 C -0.532 4.532 8 H 0.028 0.972 9 C 0.014 3.986 10 C -0.025 4.025 11 H 0.115 0.885 12 S -0.380 6.380 13 C -0.091 4.091 14 C 0.113 3.887 15 H 0.130 0.870 16 O -0.553 6.553 17 H 0.267 0.733 18 H 0.038 0.962 19 H 0.017 0.983 20 H 0.117 0.883 21 H 0.130 0.870 22 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.730 -4.866 2.468 16.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.775 3.225 4 H -0.201 1.201 5 H -0.204 1.204 6 H -0.165 1.165 7 C -0.570 4.570 8 H 0.047 0.953 9 C -0.024 4.024 10 C -0.153 4.153 11 H 0.133 0.867 12 S -0.156 6.156 13 C -0.239 4.239 14 C 0.052 3.948 15 H 0.147 0.853 16 O -0.361 6.361 17 H 0.075 0.925 18 H 0.056 0.944 19 H 0.036 0.964 20 H 0.135 0.865 21 H 0.149 0.851 22 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 14.328 -4.629 1.043 15.093 hybrid contribution 0.354 0.459 0.748 0.946 sum 14.682 -4.170 1.791 15.368 Atomic orbital electron populations 1.70070 1.08291 1.28183 1.52593 1.25994 0.95631 1.03531 0.94002 0.85637 0.79729 0.78235 0.78929 1.20113 1.20436 1.16457 1.21450 0.91956 0.93043 1.50581 0.95317 1.19288 0.93541 0.92340 0.97208 1.24408 0.98382 1.00814 0.91693 0.86749 1.89371 1.40575 1.62938 1.22671 1.25058 0.97761 1.02222 0.98833 1.22387 0.90085 0.85122 0.97241 0.85263 1.86627 1.24713 1.45216 1.79514 0.92453 0.94427 0.96420 0.86462 0.85148 0.74891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.86 13.96 21.45 0.30 -61.56 14 2 C 0.01 0.32 5.47 84.65 0.46 0.78 14 3 Si 0.95 46.44 27.47 68.60 1.88 48.32 14 4 H -0.28 -13.34 7.11 99.48 0.71 -12.64 14 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 14 6 H -0.24 -10.82 6.54 99.48 0.65 -10.17 14 7 C -0.53 -32.10 9.65 25.60 0.25 -31.86 14 8 H 0.03 1.91 7.99 -2.91 -0.02 1.89 14 9 C 0.01 0.70 3.29 29.85 0.10 0.80 14 10 C -0.02 -0.97 3.41 30.61 0.10 -0.86 14 11 H 0.11 4.34 8.13 -2.39 -0.02 4.32 14 12 S -0.38 -15.35 24.09 -56.49 -1.36 -16.71 14 13 C -0.09 -2.17 7.79 72.00 0.56 -1.61 14 14 C 0.11 2.93 4.83 30.62 0.15 3.07 14 15 H 0.13 2.26 8.14 -2.39 -0.02 2.24 14 16 O -0.55 -15.04 12.49 -148.98 -1.86 -16.90 14 17 H 0.27 16.12 8.31 -92.71 -0.77 15.35 14 18 H 0.04 1.77 7.20 -2.39 -0.02 1.75 14 19 H 0.02 0.92 7.26 -2.39 -0.02 0.90 14 20 H 0.12 2.25 8.14 -2.38 -0.02 2.23 14 21 H 0.13 2.46 8.14 -2.39 -0.02 2.44 14 22 H 0.40 5.63 9.12 -74.06 -0.68 4.96 14 Total: -1.00 -76.68 205.63 1.07 -75.61 By element: Atomic # 1 Polarization: 0.42 SS G_CDS: 0.48 Total: 0.91 kcal Atomic # 6 Polarization: -31.30 SS G_CDS: 1.62 Total: -29.68 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: 0.30 Total: -61.56 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -1.86 Total: -16.90 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.88 Total: 48.32 kcal Atomic # 16 Polarization: -15.35 SS G_CDS: -1.36 Total: -16.71 kcal Total: -76.68 1.07 -75.61 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259516208.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.799 kcal (2) G-P(sol) polarization free energy of solvation -76.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds