Wall clock time and date at job start Mon Mar 30 2020 02:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00268 * 2 1 4 4 H 1.48504 * 109.47315 * 264.80735 * 3 2 1 5 5 H 1.48504 * 109.47195 * 24.80661 * 3 2 1 6 6 H 1.48499 * 109.47174 * 144.80630 * 3 2 1 7 7 C 1.37884 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99514 * 4.62748 * 7 2 1 9 9 C 1.50689 * 120.00070 * 184.62778 * 7 2 1 10 10 H 1.08997 * 110.06227 * 336.94209 * 9 7 2 11 11 C 1.54269 * 110.03292 * 215.52119 * 9 7 2 12 12 C 1.54892 * 104.19711 * 217.10749 * 11 9 7 13 13 C 1.54883 * 102.74834 * 37.94265 * 12 11 9 14 14 C 1.53878 * 110.03312 * 98.35645 * 9 7 2 15 15 F 1.39898 * 110.03413 * 238.56773 * 14 9 7 16 16 F 1.39898 * 110.03210 * 359.97438 * 14 9 7 17 17 H 0.97006 * 119.99881 * 359.97438 * 1 2 3 18 18 H 1.09001 * 110.48658 * 335.78571 * 11 9 7 19 19 H 1.08999 * 110.48644 * 98.43055 * 11 9 7 20 20 H 1.09003 * 110.75452 * 156.26080 * 12 11 9 21 21 H 1.08997 * 110.75592 * 279.62522 * 12 11 9 22 22 H 1.09004 * 110.48798 * 203.37539 * 13 12 11 23 23 H 1.09003 * 110.60154 * 80.79048 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6064 1.9830 -1.3943 5 1 1.3961 2.6819 0.5874 6 1 3.4875 1.4742 0.8069 7 6 2.0045 -1.1941 -0.0005 8 1 1.4671 -2.1278 -0.0764 9 6 3.5077 -1.1963 0.1048 10 1 3.9074 -0.2392 -0.2304 11 6 4.0954 -2.3414 -0.7458 12 6 5.2945 -2.8571 0.0881 13 6 4.7656 -2.7645 1.5408 14 6 3.9339 -1.4653 1.5587 15 9 4.7123 -0.4045 2.0340 16 9 2.8038 -1.6303 2.3666 17 1 -0.4850 0.8401 0.0004 18 1 3.3578 -3.1321 -0.8827 19 1 4.4355 -1.9644 -1.7103 20 1 5.5307 -3.8889 -0.1721 21 1 6.1644 -2.2146 -0.0480 22 1 5.5948 -2.6963 2.2451 23 1 4.1367 -3.6233 1.7755 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259572447.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:51 Heat of formation + Delta-G solvation = -119.021910 kcal Electronic energy + Delta-G solvation = -10981.775830 eV Core-core repulsion = 8657.933692 eV Total energy + Delta-G solvation = -2323.842137 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 176.071 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -47.70648 -45.73069 -36.52661 -32.57326 -29.16864 -26.92545 -23.78800 -20.45421 -19.39705 -17.27776 -16.12574 -15.79861 -14.96340 -14.12563 -13.48591 -13.26013 -12.84576 -12.56841 -12.13785 -12.04938 -11.39749 -11.11834 -10.79187 -10.57944 -10.41050 -9.90616 -9.70233 -9.48571 -9.28666 -8.56378 -6.14475 -4.15958 3.27808 3.36896 3.44182 4.39303 4.73261 4.90026 5.16100 5.27322 5.44784 5.94092 6.03839 6.07958 6.17154 6.20992 6.33955 6.55237 6.72736 6.92543 7.10979 7.61145 8.41053 8.90008 9.47076 10.97707 Molecular weight = 176.07amu Principal moments of inertia in cm(-1) A = 0.051338 B = 0.020769 C = 0.019777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.277587 B = 1347.841813 C = 1415.453408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.079 3.921 3 Si 0.865 3.135 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.256 1.256 7 C -0.507 4.507 8 H 0.080 0.920 9 C -0.025 4.025 10 H 0.057 0.943 11 C -0.108 4.108 12 C -0.125 4.125 13 C -0.158 4.158 14 C 0.263 3.737 15 F -0.221 7.221 16 F -0.189 7.189 17 H 0.266 0.734 18 H 0.071 0.929 19 H 0.061 0.939 20 H 0.067 0.933 21 H 0.065 0.935 22 H 0.073 0.927 23 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.215 -3.143 0.561 9.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.125 4.125 3 Si 0.692 3.308 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.180 1.180 7 C -0.544 4.544 8 H 0.098 0.902 9 C -0.045 4.045 10 H 0.075 0.925 11 C -0.146 4.146 12 C -0.163 4.163 13 C -0.196 4.196 14 C 0.226 3.774 15 F -0.202 7.202 16 F -0.170 7.170 17 H 0.076 0.924 18 H 0.090 0.910 19 H 0.080 0.920 20 H 0.086 0.914 21 H 0.084 0.916 22 H 0.092 0.908 23 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.011 -2.993 0.599 9.514 hybrid contribution 0.292 1.045 0.278 1.120 sum 9.303 -1.948 0.877 9.545 Atomic orbital electron populations 1.69887 1.06334 1.27264 1.48946 1.25082 0.94777 0.99083 0.93517 0.87006 0.81040 0.83746 0.79030 1.19877 1.21160 1.17982 1.20742 0.87501 0.95053 1.51067 0.90224 1.20726 0.99071 0.96789 0.87871 0.92508 1.22393 0.95639 0.98803 0.97793 1.22483 0.98727 1.00916 0.94175 1.23260 0.99964 0.97412 0.99013 1.22627 0.77886 0.84199 0.92674 1.92888 1.75859 1.60711 1.90725 1.92954 1.53160 1.95485 1.75378 0.92403 0.91007 0.91983 0.91432 0.91634 0.90831 0.89304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.31 13.96 55.43 0.77 -26.54 14 2 C 0.08 2.31 5.47 -17.82 -0.10 2.22 14 3 Si 0.87 21.93 27.01 -169.99 -4.59 17.33 14 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 14 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 14 6 H -0.26 -6.44 6.32 56.52 0.36 -6.08 14 7 C -0.51 -14.27 7.65 -34.44 -0.26 -14.54 14 8 H 0.08 2.41 7.95 -52.49 -0.42 1.99 14 9 C -0.02 -0.59 2.41 -90.66 -0.22 -0.81 14 10 H 0.06 1.37 5.12 -51.93 -0.27 1.11 14 11 C -0.11 -2.07 6.35 -25.07 -0.16 -2.23 14 12 C -0.13 -1.98 6.91 -24.74 -0.17 -2.15 14 13 C -0.16 -2.79 6.40 -25.07 -0.16 -2.95 14 14 C 0.26 6.00 2.52 -25.61 -0.06 5.93 14 15 F -0.22 -5.13 16.57 2.25 0.04 -5.10 14 16 F -0.19 -4.85 15.71 2.25 0.04 -4.82 14 17 H 0.27 7.66 8.31 -40.82 -0.34 7.32 14 18 H 0.07 1.39 7.77 -51.93 -0.40 0.99 14 19 H 0.06 1.08 8.14 -51.93 -0.42 0.66 14 20 H 0.07 0.89 8.14 -51.93 -0.42 0.46 14 21 H 0.06 0.96 8.14 -51.93 -0.42 0.54 14 22 H 0.07 1.14 8.11 -51.93 -0.42 0.72 14 23 H 0.09 1.49 8.12 -51.93 -0.42 1.07 14 LS Contribution 201.29 15.07 3.03 3.03 Total: -1.00 -30.63 201.29 -4.22 -34.85 By element: Atomic # 1 Polarization: -1.86 SS G_CDS: -2.38 Total: -4.24 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -1.13 Total: -14.53 kcal Atomic # 7 Polarization: -27.31 SS G_CDS: 0.77 Total: -26.54 kcal Atomic # 9 Polarization: -9.98 SS G_CDS: 0.07 Total: -9.91 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.59 Total: 17.33 kcal Total LS contribution 3.03 Total: 3.03 kcal Total: -30.63 -4.22 -34.85 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259572447.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.173 kcal (2) G-P(sol) polarization free energy of solvation -30.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds