Wall clock time and date at job start Mon Mar 30 2020 02:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00268 * 2 1 4 4 H 1.48504 * 109.47315 * 264.80735 * 3 2 1 5 5 H 1.48504 * 109.47195 * 24.80661 * 3 2 1 6 6 H 1.48499 * 109.47174 * 144.80630 * 3 2 1 7 7 C 1.37884 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99514 * 4.62748 * 7 2 1 9 9 C 1.50689 * 120.00070 * 184.62778 * 7 2 1 10 10 H 1.08997 * 110.06227 * 336.94209 * 9 7 2 11 11 C 1.54269 * 110.03292 * 215.52119 * 9 7 2 12 12 C 1.54892 * 104.19711 * 217.10749 * 11 9 7 13 13 C 1.54883 * 102.74834 * 37.94265 * 12 11 9 14 14 C 1.53878 * 110.03312 * 98.35645 * 9 7 2 15 15 F 1.39898 * 110.03413 * 238.56773 * 14 9 7 16 16 F 1.39898 * 110.03210 * 359.97438 * 14 9 7 17 17 H 0.97006 * 119.99881 * 359.97438 * 1 2 3 18 18 H 1.09001 * 110.48658 * 335.78571 * 11 9 7 19 19 H 1.08999 * 110.48644 * 98.43055 * 11 9 7 20 20 H 1.09003 * 110.75452 * 156.26080 * 12 11 9 21 21 H 1.08997 * 110.75592 * 279.62522 * 12 11 9 22 22 H 1.09004 * 110.48798 * 203.37539 * 13 12 11 23 23 H 1.09003 * 110.60154 * 80.79048 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6064 1.9830 -1.3943 5 1 1.3961 2.6819 0.5874 6 1 3.4875 1.4742 0.8069 7 6 2.0045 -1.1941 -0.0005 8 1 1.4671 -2.1278 -0.0764 9 6 3.5077 -1.1963 0.1048 10 1 3.9074 -0.2392 -0.2304 11 6 4.0954 -2.3414 -0.7458 12 6 5.2945 -2.8571 0.0881 13 6 4.7656 -2.7645 1.5408 14 6 3.9339 -1.4653 1.5587 15 9 4.7123 -0.4045 2.0340 16 9 2.8038 -1.6303 2.3666 17 1 -0.4850 0.8401 0.0004 18 1 3.3578 -3.1321 -0.8827 19 1 4.4355 -1.9644 -1.7103 20 1 5.5307 -3.8889 -0.1721 21 1 6.1644 -2.2146 -0.0480 22 1 5.5948 -2.6963 2.2451 23 1 4.1367 -3.6233 1.7755 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259572447.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:51 Heat of formation + Delta-G solvation = -138.637694 kcal Electronic energy + Delta-G solvation = -10982.626434 eV Core-core repulsion = 8657.933692 eV Total energy + Delta-G solvation = -2324.692741 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 176.071 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -49.55008 -47.61713 -38.12507 -34.69485 -30.98337 -28.48808 -25.77282 -21.90569 -21.22474 -19.33983 -17.99806 -17.60435 -16.66666 -16.10563 -15.09941 -14.97251 -14.78555 -14.39753 -14.00948 -13.87160 -13.06605 -13.00301 -12.56461 -12.04010 -11.97621 -11.75502 -11.54552 -11.29903 -11.22701 -10.71762 -8.37636 -6.42297 1.26670 1.31809 1.41612 2.27684 2.86634 3.16257 3.56484 3.73574 3.79430 4.44256 4.51610 4.56139 4.63482 4.79534 4.92137 5.11303 5.20970 5.35788 5.47565 5.59097 6.19743 6.64168 7.23369 8.78552 Molecular weight = 176.07amu Principal moments of inertia in cm(-1) A = 0.051338 B = 0.020769 C = 0.019777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.277587 B = 1347.841813 C = 1415.453408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.019 3.981 3 Si 0.926 3.074 4 H -0.252 1.252 5 H -0.286 1.286 6 H -0.253 1.253 7 C -0.507 4.507 8 H 0.042 0.958 9 C -0.038 4.038 10 H 0.054 0.946 11 C -0.108 4.108 12 C -0.111 4.111 13 C -0.150 4.150 14 C 0.246 3.754 15 F -0.224 7.224 16 F -0.214 7.214 17 H 0.268 0.732 18 H 0.061 0.939 19 H 0.080 0.920 20 H 0.105 0.895 21 H 0.084 0.916 22 H 0.101 0.899 23 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.780 -3.382 0.272 12.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.180 4.180 3 Si 0.750 3.250 4 H -0.177 1.177 5 H -0.212 1.212 6 H -0.177 1.177 7 C -0.544 4.544 8 H 0.060 0.940 9 C -0.057 4.057 10 H 0.073 0.927 11 C -0.146 4.146 12 C -0.148 4.148 13 C -0.188 4.188 14 C 0.210 3.790 15 F -0.206 7.206 16 F -0.195 7.195 17 H 0.077 0.923 18 H 0.080 0.920 19 H 0.099 0.901 20 H 0.123 0.877 21 H 0.103 0.897 22 H 0.120 0.880 23 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.598 -3.245 0.301 12.047 hybrid contribution -0.536 1.058 0.376 1.244 sum 11.062 -2.187 0.677 11.297 Atomic orbital electron populations 1.70024 1.08054 1.28197 1.51397 1.25942 0.95534 1.02865 0.93681 0.86038 0.79540 0.79363 0.80074 1.17656 1.21195 1.17704 1.20972 0.90149 0.93448 1.49824 0.94010 1.20858 0.96176 0.98892 0.89798 0.92745 1.22347 0.96887 0.96842 0.98477 1.22503 0.97377 1.03456 0.91467 1.23293 0.99982 0.94162 1.01321 1.23048 0.78138 0.86669 0.91152 1.92874 1.75672 1.61342 1.90670 1.92906 1.54902 1.95706 1.76007 0.92326 0.92020 0.90138 0.87699 0.89733 0.88032 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.42 13.96 21.45 0.30 -59.12 14 2 C 0.02 1.10 5.47 84.66 0.46 1.57 14 3 Si 0.93 45.34 27.01 68.60 1.85 47.19 14 4 H -0.25 -11.40 7.11 99.48 0.71 -10.69 14 5 H -0.29 -13.88 7.11 99.48 0.71 -13.18 14 6 H -0.25 -12.14 6.32 99.48 0.63 -11.51 14 7 C -0.51 -29.04 7.65 25.60 0.20 -28.84 14 8 H 0.04 2.63 7.95 -2.91 -0.02 2.61 14 9 C -0.04 -1.74 2.41 -10.82 -0.03 -1.76 14 10 H 0.05 2.52 5.12 -2.39 -0.01 2.51 14 11 C -0.11 -3.83 6.35 31.67 0.20 -3.63 14 12 C -0.11 -2.96 6.91 31.88 0.22 -2.74 14 13 C -0.15 -4.73 6.40 31.67 0.20 -4.52 14 14 C 0.25 10.82 2.52 31.32 0.08 10.90 14 15 F -0.22 -9.95 16.57 44.97 0.75 -9.20 14 16 F -0.21 -11.02 15.71 44.97 0.71 -10.32 14 17 H 0.27 15.87 8.31 -92.70 -0.77 15.10 14 18 H 0.06 2.30 7.77 -2.39 -0.02 2.28 14 19 H 0.08 2.55 8.14 -2.39 -0.02 2.53 14 20 H 0.10 2.12 8.14 -2.39 -0.02 2.10 14 21 H 0.08 2.00 8.14 -2.39 -0.02 1.98 14 22 H 0.10 2.68 8.11 -2.38 -0.02 2.66 14 23 H 0.09 2.89 8.12 -2.39 -0.02 2.87 14 Total: -1.00 -67.29 201.29 6.06 -61.23 By element: Atomic # 1 Polarization: -1.86 SS G_CDS: 1.12 Total: -0.74 kcal Atomic # 6 Polarization: -30.37 SS G_CDS: 1.34 Total: -29.03 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: 0.30 Total: -59.12 kcal Atomic # 9 Polarization: -20.97 SS G_CDS: 1.45 Total: -19.52 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.85 Total: 47.19 kcal Total: -67.29 6.06 -61.23 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259572447.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.406 kcal (2) G-P(sol) polarization free energy of solvation -67.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds