Wall clock time and date at job start Mon Mar 30 2020 01:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00251 * 2 1 4 4 H 1.48500 * 109.46957 * 270.00054 * 3 2 1 5 5 H 1.48500 * 109.47115 * 29.99583 * 3 2 1 6 6 H 1.48494 * 109.47171 * 149.99931 * 3 2 1 7 7 C 1.37874 * 119.99589 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99835 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00140 * 0.02562 * 7 2 1 10 10 H 1.08992 * 109.57649 * 299.83626 * 9 7 2 11 11 C 1.53092 * 109.52343 * 59.99938 * 9 7 2 12 12 O 1.42905 * 109.42428 * 177.51967 * 11 9 7 13 13 C 1.42898 * 114.09851 * 298.83405 * 12 11 9 14 14 C 1.53097 * 109.41490 * 61.15689 * 13 12 11 15 15 C 1.53178 * 109.16320 * 302.39102 * 14 13 12 16 16 H 1.08996 * 109.54349 * 297.11136 * 15 14 13 17 17 F 1.39900 * 109.54255 * 176.84802 * 15 14 13 18 18 H 0.97001 * 119.99973 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.48343 * 57.52953 * 11 9 7 20 20 H 1.08999 * 109.47546 * 297.50547 * 11 9 7 21 21 H 1.08995 * 109.48500 * 181.13987 * 13 12 11 22 22 H 1.09000 * 109.48426 * 301.17967 * 13 12 11 23 23 H 1.09003 * 109.51867 * 62.29966 * 14 13 12 24 24 H 1.08997 * 109.52106 * 182.48365 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6255 -2.5598 0.8911 11 6 0.3707 -2.5818 -1.2494 12 8 -0.2986 -3.8441 -1.2767 13 6 0.5803 -4.9694 -1.3322 14 6 1.4690 -4.9831 -0.0857 15 6 2.2451 -3.6648 -0.0070 16 1 2.9033 -3.5771 -0.8713 17 9 3.0056 -3.6388 1.1670 18 1 -0.4850 0.8401 0.0004 19 1 0.9923 -2.4805 -2.1390 20 1 -0.3669 -1.7796 -1.2281 21 1 -0.0063 -5.8873 -1.3705 22 1 1.2047 -4.8995 -2.2229 23 1 0.8478 -5.0938 0.8032 24 1 2.1700 -5.8154 -0.1472 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259583474.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:16 Heat of formation + Delta-G solvation = -113.794544 kcal Electronic energy + Delta-G solvation = -10659.788697 eV Core-core repulsion = 8486.945019 eV Total energy + Delta-G solvation = -2172.843678 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 174.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -46.58803 -38.07972 -33.52485 -31.76632 -29.83119 -25.19415 -23.51375 -22.08032 -19.47737 -16.67129 -15.62870 -15.20334 -14.92485 -14.53721 -13.94167 -13.69517 -13.16649 -12.23873 -11.90579 -11.77607 -11.04913 -10.97546 -10.57102 -10.39211 -10.30089 -9.99505 -9.11283 -9.06200 -8.68218 -8.39739 -6.12147 -4.18105 3.26651 3.33588 3.38291 4.35239 4.79951 5.18540 5.23015 5.46482 5.54872 5.84757 5.97181 6.15838 6.22642 6.45340 6.58175 6.62150 7.05297 7.49410 7.63250 7.83461 8.05274 8.35768 8.84636 9.46790 10.95447 Molecular weight = 174.08amu Principal moments of inertia in cm(-1) A = 0.059232 B = 0.016854 C = 0.013936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.601955 B = 1660.973820 C = 2008.730609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.061 0.939 9 C -0.004 4.004 10 H 0.045 0.955 11 C 0.065 3.935 12 O -0.398 6.398 13 C 0.068 3.932 14 C -0.181 4.181 15 C 0.094 3.906 16 H 0.067 0.933 17 F -0.220 7.220 18 H 0.265 0.735 19 H 0.028 0.972 20 H 0.127 0.873 21 H 0.083 0.917 22 H 0.042 0.958 23 H 0.075 0.925 24 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.824 -5.916 -2.426 6.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.079 0.921 9 C -0.022 4.022 10 H 0.063 0.937 11 C -0.011 4.011 12 O -0.317 6.317 13 C -0.010 4.010 14 C -0.219 4.219 15 C 0.058 3.942 16 H 0.085 0.915 17 F -0.201 7.201 18 H 0.074 0.926 19 H 0.046 0.954 20 H 0.145 0.855 21 H 0.101 0.899 22 H 0.060 0.940 23 H 0.094 0.906 24 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.491 -5.795 -2.386 6.442 hybrid contribution 0.862 0.914 0.111 1.261 sum 2.354 -4.881 -2.276 5.878 Atomic orbital electron populations 1.69830 1.05924 1.27019 1.50196 1.25001 0.94966 0.99431 0.94583 0.86463 0.79881 0.82806 0.78164 1.20535 1.21048 1.19762 1.21020 0.93138 0.89838 1.51456 0.92078 1.19863 0.93321 0.92319 0.96746 0.93653 1.23090 0.98074 0.83318 0.96619 1.87892 1.33912 1.15110 1.94765 1.22304 0.92693 0.90634 0.95345 1.22844 0.99923 0.98185 1.00990 1.21774 0.92426 0.96368 0.83637 0.91498 1.92717 1.78039 1.97624 1.51687 0.92550 0.95359 0.85508 0.89893 0.94025 0.90620 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.26 11.35 55.43 0.63 -24.63 14 2 C 0.06 1.71 5.30 -17.82 -0.09 1.61 14 3 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 14 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 14 5 H -0.28 -6.67 7.11 56.52 0.40 -6.26 14 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 14 7 C -0.52 -14.33 8.38 -34.44 -0.29 -14.62 14 8 H 0.06 1.69 7.75 -52.49 -0.41 1.29 14 9 C 0.00 -0.09 2.09 -91.62 -0.19 -0.28 14 10 H 0.05 1.29 8.14 -51.93 -0.42 0.87 14 11 C 0.06 1.57 5.87 37.20 0.22 1.79 14 12 O -0.40 -8.77 10.77 -35.23 -0.38 -9.15 14 13 C 0.07 1.19 6.84 37.21 0.25 1.44 14 14 C -0.18 -3.29 5.88 -26.59 -0.16 -3.45 14 15 C 0.09 2.07 3.29 -26.53 -0.09 1.98 14 16 H 0.07 1.40 8.14 -51.93 -0.42 0.98 14 17 F -0.22 -5.17 16.88 2.25 0.04 -5.13 14 18 H 0.26 7.11 8.31 -40.82 -0.34 6.77 14 19 H 0.03 0.66 8.14 -51.93 -0.42 0.23 14 20 H 0.13 3.39 6.15 -51.93 -0.32 3.07 14 21 H 0.08 1.21 8.14 -51.93 -0.42 0.78 14 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 14 23 H 0.08 1.41 8.14 -51.93 -0.42 0.99 14 24 H 0.07 1.02 8.14 -51.93 -0.42 0.59 14 LS Contribution 206.70 15.07 3.11 3.11 Total: -1.00 -28.85 206.70 -4.78 -33.64 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: -2.82 Total: -2.53 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -0.34 Total: -11.52 kcal Atomic # 7 Polarization: -25.26 SS G_CDS: 0.63 Total: -24.63 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -0.38 Total: -9.15 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.04 Total: -5.13 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 3.11 Total: 3.11 kcal Total: -28.85 -4.78 -33.64 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259583474.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.158 kcal (2) G-P(sol) polarization free energy of solvation -28.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds