Wall clock time and date at job start Mon Mar 30 2020 01:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 120.00376 * 2 1 4 4 H 1.48498 * 109.47665 * 270.00398 * 3 2 1 5 5 H 1.48507 * 109.47074 * 30.00399 * 3 2 1 6 6 H 1.48504 * 109.47261 * 150.00071 * 3 2 1 7 7 C 1.37886 * 119.99521 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99632 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00176 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.52708 * 59.87431 * 9 7 2 11 11 C 1.53095 * 109.57480 * 299.71553 * 9 7 2 12 12 O 1.42906 * 109.41780 * 182.45525 * 11 9 7 13 13 C 1.42903 * 114.09431 * 61.15768 * 12 11 9 14 14 C 1.53095 * 109.41530 * 298.84283 * 13 12 11 15 15 C 1.53176 * 109.16286 * 57.61206 * 14 13 12 16 16 H 1.08994 * 109.54424 * 62.88738 * 15 14 13 17 17 F 1.39900 * 109.53903 * 183.15093 * 15 14 13 18 18 H 0.96994 * 119.99733 * 359.97438 * 1 2 3 19 19 H 1.08998 * 109.47951 * 302.44227 * 11 9 7 20 20 H 1.09003 * 109.48042 * 62.46142 * 11 9 7 21 21 H 1.08997 * 109.48187 * 178.86172 * 13 12 11 22 22 H 1.08997 * 109.47990 * 58.82878 * 13 12 11 23 23 H 1.09001 * 109.52293 * 297.69958 * 14 13 12 24 24 H 1.09007 * 109.52035 * 177.51726 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6219 -2.5567 -0.8888 11 6 0.3757 -2.5861 1.2526 12 8 -0.2933 -3.8486 1.2781 13 6 0.5860 -4.9740 1.3261 14 6 1.4697 -4.9830 0.0759 15 6 2.2453 -3.6644 -0.0011 16 1 2.9069 -3.5796 0.8608 17 9 3.0010 -3.6341 -1.1781 18 1 -0.4849 0.8400 0.0004 19 1 1.0009 -2.4879 2.1401 20 1 -0.3620 -1.7838 1.2371 21 1 -0.0002 -5.8921 1.3634 22 1 1.2139 -4.9071 2.2146 23 1 0.8451 -5.0907 -0.8109 24 1 2.1712 -5.8155 0.1317 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259583487.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:19 Heat of formation + Delta-G solvation = -132.532908 kcal Electronic energy + Delta-G solvation = -10660.039057 eV Core-core repulsion = 8486.382822 eV Total energy + Delta-G solvation = -2173.656235 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 174.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.40253 -39.78805 -35.52998 -33.47829 -31.68410 -27.17568 -25.25505 -23.82050 -21.24041 -18.70754 -17.42228 -16.97476 -16.72844 -16.27214 -15.70882 -15.47924 -14.89208 -14.11677 -13.68798 -13.52759 -12.89640 -12.78261 -12.36750 -12.26290 -12.10008 -11.72689 -10.98183 -10.91815 -10.60814 -10.33010 -8.21449 -6.36139 1.40683 1.41463 1.52451 2.37995 3.03298 3.23223 3.68463 3.89491 4.01919 4.22556 4.44470 4.50009 4.64507 4.82161 4.91044 5.05886 5.18408 5.43684 5.64919 5.77000 6.06935 6.51081 6.74016 7.32657 8.85279 Molecular weight = 174.08amu Principal moments of inertia in cm(-1) A = 0.059249 B = 0.016847 C = 0.013936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.466384 B = 1661.649470 C = 2008.745140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.015 3.985 3 Si 0.964 3.036 4 H -0.278 1.278 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.056 0.944 9 C -0.008 4.008 10 H 0.003 0.997 11 C 0.081 3.919 12 O -0.413 6.413 13 C 0.060 3.940 14 C -0.172 4.172 15 C 0.090 3.910 16 H 0.081 0.919 17 F -0.231 7.231 18 H 0.267 0.733 19 H 0.036 0.964 20 H 0.095 0.905 21 H 0.122 0.878 22 H 0.062 0.938 23 H 0.065 0.935 24 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.639 -6.671 3.147 7.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.184 4.184 3 Si 0.789 3.211 4 H -0.204 1.204 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.578 4.578 8 H 0.074 0.926 9 C -0.027 4.027 10 H 0.021 0.979 11 C 0.004 3.996 12 O -0.333 6.333 13 C -0.017 4.017 14 C -0.210 4.210 15 C 0.054 3.946 16 H 0.099 0.901 17 F -0.212 7.212 18 H 0.076 0.924 19 H 0.054 0.946 20 H 0.113 0.887 21 H 0.140 0.860 22 H 0.081 0.919 23 H 0.084 0.916 24 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.308 -6.570 3.119 7.630 hybrid contribution 0.596 1.084 -0.377 1.293 sum 2.904 -5.486 2.743 6.786 Atomic orbital electron populations 1.69968 1.07258 1.27928 1.50389 1.25818 0.95795 1.02812 0.94004 0.85455 0.78748 0.78617 0.78274 1.20369 1.20224 1.18962 1.21316 0.93104 0.91329 1.52102 0.92598 1.19811 0.93815 0.93521 0.95582 0.97869 1.22629 0.96822 0.84024 0.96109 1.87849 1.35235 1.15338 1.94878 1.22704 0.93100 0.90138 0.95718 1.22803 1.00197 0.97043 1.00995 1.21865 0.92190 0.97071 0.83503 0.90092 1.92691 1.78554 1.97720 1.52244 0.92373 0.94555 0.88733 0.86041 0.91946 0.91578 0.87595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.90 11.37 21.45 0.24 -52.65 14 2 C 0.02 0.84 5.31 84.66 0.45 1.29 14 3 Si 0.96 43.51 29.54 68.60 2.03 45.54 14 4 H -0.28 -12.42 7.11 99.48 0.71 -11.72 14 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 14 6 H -0.27 -11.54 7.11 99.48 0.71 -10.84 14 7 C -0.54 -30.31 8.38 25.60 0.21 -30.10 14 8 H 0.06 3.11 7.74 -2.91 -0.02 3.08 14 9 C -0.01 -0.43 2.08 -11.45 -0.02 -0.45 14 10 H 0.00 0.19 8.14 -2.39 -0.02 0.17 14 11 C 0.08 3.92 5.87 72.01 0.42 4.35 14 12 O -0.41 -17.75 10.77 -148.98 -1.60 -19.35 14 13 C 0.06 1.90 6.84 72.01 0.49 2.39 14 14 C -0.17 -5.78 5.88 30.69 0.18 -5.60 14 15 C 0.09 3.84 3.29 30.71 0.10 3.94 14 16 H 0.08 3.23 8.14 -2.39 -0.02 3.21 14 17 F -0.23 -10.70 16.88 44.97 0.76 -9.94 14 18 H 0.27 14.53 8.31 -92.71 -0.77 13.75 14 19 H 0.04 1.67 8.14 -2.39 -0.02 1.65 14 20 H 0.09 5.19 6.17 -2.39 -0.01 5.18 14 21 H 0.12 2.97 8.14 -2.39 -0.02 2.95 14 22 H 0.06 1.76 8.14 -2.39 -0.02 1.74 14 23 H 0.07 2.34 8.14 -2.39 -0.02 2.32 14 24 H 0.11 2.76 8.14 -2.38 -0.02 2.74 14 Total: -1.00 -62.12 206.74 4.44 -57.68 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: 1.18 Total: 2.90 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: 1.84 Total: -24.18 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: 0.24 Total: -52.65 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -1.60 Total: -19.35 kcal Atomic # 9 Polarization: -10.70 SS G_CDS: 0.76 Total: -9.94 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -62.12 4.44 -57.68 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259583487.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.848 kcal (2) G-P(sol) polarization free energy of solvation -62.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds