Wall clock time and date at job start Mon Mar 30 2020 01:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.52408 * 59.87484 * 9 7 2 11 11 C 1.53091 * 109.52461 * 299.68216 * 9 7 2 12 12 O 1.42903 * 109.41246 * 182.48516 * 11 9 7 13 13 C 1.42907 * 114.09609 * 61.16322 * 12 11 9 14 14 C 1.53086 * 109.41625 * 298.83687 * 13 12 11 15 15 C 1.53181 * 109.51772 * 179.97438 * 9 7 2 16 16 H 1.08997 * 109.54750 * 296.75468 * 15 9 7 17 17 F 1.39901 * 109.54590 * 57.02275 * 15 9 7 18 18 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 19 19 H 1.08995 * 109.48176 * 302.47184 * 11 9 7 20 20 H 1.09005 * 109.47536 * 62.50638 * 11 9 7 21 21 H 1.09006 * 109.47671 * 178.85147 * 13 12 11 22 22 H 1.08999 * 109.48044 * 58.82451 * 13 12 11 23 23 H 1.09000 * 109.52176 * 297.70539 * 14 13 12 24 24 H 1.08992 * 109.52541 * 177.51757 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 1 0.6227 -2.5570 -0.8883 11 6 0.3760 -2.5847 1.2538 12 8 -0.2930 -3.8472 1.2807 13 6 0.5864 -4.9725 1.3299 14 6 1.4699 -4.9830 0.0798 15 6 2.2455 -3.6643 0.0005 16 1 2.8339 -3.6415 -0.9167 17 9 3.0951 -3.5544 1.1065 18 1 -0.4850 0.8401 0.0004 19 1 1.0011 -2.4855 2.1411 20 1 -0.3619 -1.7825 1.2372 21 1 0.0000 -5.8906 1.3683 22 1 1.2142 -4.9046 2.2183 23 1 0.8453 -5.0916 -0.8069 24 1 2.1714 -5.8153 0.1364 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259583493.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:21 Heat of formation + Delta-G solvation = -130.818074 kcal Electronic energy + Delta-G solvation = -10754.769600 eV Core-core repulsion = 8581.187727 eV Total energy + Delta-G solvation = -2173.581874 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 174.080 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.41756 -39.57169 -35.53723 -33.46776 -31.67622 -27.16850 -25.62573 -23.78723 -20.83151 -18.66797 -17.45633 -16.88005 -16.69515 -16.36687 -15.83121 -15.54805 -14.90151 -14.00946 -13.45587 -13.32636 -12.87911 -12.79337 -12.46304 -12.31431 -12.28433 -11.71530 -11.02847 -10.93277 -10.58620 -10.14808 -8.20794 -6.34486 1.40258 1.41703 1.52705 2.38462 3.03361 3.25230 3.75741 3.91063 4.06683 4.23975 4.47587 4.48890 4.68170 4.79457 4.96422 5.08597 5.14358 5.44074 5.68887 5.75789 6.07072 6.51105 6.75289 7.33962 8.85991 Molecular weight = 174.08amu Principal moments of inertia in cm(-1) A = 0.068597 B = 0.016514 C = 0.014413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.081612 B = 1695.134088 C = 1942.218302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.015 3.985 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.538 4.538 8 H 0.055 0.945 9 C -0.009 4.009 10 H 0.026 0.974 11 C 0.077 3.923 12 O -0.412 6.412 13 C 0.053 3.947 14 C -0.171 4.171 15 C 0.088 3.912 16 H 0.081 0.919 17 F -0.228 7.228 18 H 0.267 0.733 19 H 0.019 0.981 20 H 0.094 0.906 21 H 0.121 0.879 22 H 0.043 0.957 23 H 0.091 0.909 24 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.485 -6.805 0.367 7.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.184 4.184 3 Si 0.788 3.212 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.576 4.576 8 H 0.073 0.927 9 C -0.028 4.028 10 H 0.044 0.956 11 C 0.001 3.999 12 O -0.332 6.332 13 C -0.024 4.024 14 C -0.209 4.209 15 C 0.052 3.948 16 H 0.099 0.901 17 F -0.209 7.209 18 H 0.076 0.924 19 H 0.037 0.963 20 H 0.112 0.888 21 H 0.139 0.861 22 H 0.061 0.939 23 H 0.110 0.890 24 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.155 -6.700 0.392 7.049 hybrid contribution 0.636 1.109 0.025 1.279 sum 2.791 -5.591 0.417 6.263 Atomic orbital electron populations 1.69962 1.07193 1.27868 1.50530 1.25796 0.95779 1.02736 0.94097 0.85478 0.78547 0.78733 0.78481 1.19667 1.20510 1.19539 1.21305 0.93099 0.91351 1.51877 0.92677 1.19771 0.93924 0.93477 0.95594 0.95594 1.22629 0.96759 0.83918 0.96610 1.87825 1.35063 1.15305 1.94983 1.22704 0.93236 0.90043 0.96378 1.22760 1.00203 0.96942 1.00996 1.21816 0.90238 0.96871 0.85868 0.90087 1.92681 1.73328 1.97417 1.57477 0.92414 0.96308 0.88779 0.86132 0.93854 0.89041 0.87748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.73 11.37 21.45 0.24 -52.49 14 2 C 0.02 0.85 5.31 84.66 0.45 1.30 14 3 Si 0.96 43.59 29.54 68.60 2.03 45.62 14 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 14 5 H -0.28 -12.34 7.11 99.48 0.71 -11.64 14 6 H -0.27 -12.07 7.11 99.48 0.71 -11.37 14 7 C -0.54 -30.07 8.26 25.60 0.21 -29.86 14 8 H 0.05 3.07 7.69 -2.91 -0.02 3.05 14 9 C -0.01 -0.44 2.16 -11.45 -0.02 -0.47 14 10 H 0.03 1.43 8.14 -2.39 -0.02 1.41 14 11 C 0.08 3.95 5.75 72.01 0.41 4.37 14 12 O -0.41 -18.57 10.77 -148.98 -1.60 -20.17 14 13 C 0.05 1.83 6.72 72.01 0.48 2.31 14 14 C -0.17 -5.61 5.92 30.69 0.18 -5.43 14 15 C 0.09 3.70 3.56 30.72 0.11 3.81 14 16 H 0.08 3.18 8.14 -2.39 -0.02 3.16 14 17 F -0.23 -10.25 15.94 44.97 0.72 -9.54 14 18 H 0.27 14.48 8.31 -92.71 -0.77 13.71 14 19 H 0.02 0.98 7.93 -2.39 -0.02 0.96 14 20 H 0.09 5.34 6.17 -2.38 -0.01 5.33 14 21 H 0.12 3.21 8.14 -2.38 -0.02 3.19 14 22 H 0.04 1.51 7.93 -2.39 -0.02 1.49 14 23 H 0.09 2.83 8.14 -2.39 -0.02 2.81 14 24 H 0.10 2.69 8.14 -2.39 -0.02 2.67 14 Total: -1.00 -61.30 205.34 4.39 -56.92 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: 1.18 Total: 3.63 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: 1.82 Total: -23.98 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: 0.24 Total: -52.49 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -1.60 Total: -20.17 kcal Atomic # 9 Polarization: -10.25 SS G_CDS: 0.72 Total: -9.54 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -61.30 4.39 -56.92 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259583493.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.901 kcal (2) G-P(sol) polarization free energy of solvation -61.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds