Wall clock time and date at job start Mon Mar 30 2020 01:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99957 * 2 1 4 4 H 1.48500 * 109.46940 * 269.99414 * 3 2 1 5 5 H 1.48500 * 109.47096 * 29.99879 * 3 2 1 6 6 H 1.48508 * 109.46886 * 149.99895 * 3 2 1 7 7 C 1.37872 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99899 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00411 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.54018 * 300.18093 * 9 7 2 11 11 C 1.53177 * 109.61502 * 60.38475 * 9 7 2 12 12 C 1.53092 * 109.16443 * 176.88081 * 11 9 7 13 13 O 1.42905 * 109.42428 * 302.41109 * 12 11 9 14 14 C 1.42901 * 114.09770 * 61.14988 * 13 12 11 15 15 C 1.53095 * 109.41489 * 298.84274 * 14 13 12 16 16 H 1.09003 * 109.52166 * 297.70284 * 15 14 13 17 17 F 1.39902 * 109.52233 * 177.51571 * 15 14 13 18 18 H 0.97000 * 120.00048 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.51365 * 56.98397 * 11 9 7 20 20 H 1.08998 * 109.53811 * 296.79842 * 11 9 7 21 21 H 1.09002 * 109.48343 * 182.42096 * 12 11 9 22 22 H 1.08999 * 109.47546 * 62.39689 * 12 11 9 23 23 H 1.09002 * 109.48282 * 58.82206 * 14 13 12 24 24 H 1.08997 * 109.48587 * 178.84728 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6211 -2.5565 0.8882 11 6 0.3768 -2.5883 -1.2542 12 6 -0.3235 -3.9493 -1.2832 13 8 0.6566 -4.9889 -1.2496 14 6 1.4722 -4.9841 -0.0762 15 6 2.2448 -3.6647 0.0011 16 1 2.9069 -3.5793 -0.8606 17 9 3.0008 -3.6339 1.1779 18 1 -0.4850 0.8400 -0.0004 19 1 1.0011 -2.4810 -2.1412 20 1 -0.3701 -1.7947 -1.2352 21 1 -0.9134 -4.0353 -2.1957 22 1 -0.9788 -4.0394 -0.4168 23 1 0.8405 -5.0876 0.8061 24 1 2.1757 -5.8155 -0.1190 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259600414.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:09 Heat of formation + Delta-G solvation = -130.771105 kcal Electronic energy + Delta-G solvation = -10656.389897 eV Core-core repulsion = 8482.810060 eV Total energy + Delta-G solvation = -2173.579837 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 174.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.43893 -39.86851 -35.86398 -33.02559 -31.37906 -28.09255 -24.59799 -24.02116 -21.20613 -18.73238 -17.46643 -17.17110 -16.75214 -16.11946 -15.92597 -15.65727 -14.50551 -14.33386 -13.62017 -13.37751 -12.90361 -12.78260 -12.64129 -12.15029 -11.99806 -11.68600 -11.22205 -10.90262 -10.57202 -10.25517 -8.17303 -6.31741 1.39064 1.40028 1.50712 2.38937 2.90424 3.09574 3.68076 3.87611 4.21652 4.25167 4.40323 4.53025 4.64915 4.71691 4.86748 5.00290 5.31809 5.50731 5.78808 5.84473 6.19574 6.24834 6.74650 7.36054 8.87413 Molecular weight = 174.08amu Principal moments of inertia in cm(-1) A = 0.059890 B = 0.016664 C = 0.013832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.412580 B = 1679.891149 C = 2023.771645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.017 3.983 3 Si 0.958 3.042 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.273 1.273 7 C -0.539 4.539 8 H 0.048 0.952 9 C 0.018 3.982 10 H 0.006 0.994 11 C -0.135 4.135 12 C 0.060 3.940 13 O -0.385 6.385 14 C 0.047 3.953 15 C 0.061 3.939 16 H 0.078 0.922 17 F -0.225 7.225 18 H 0.264 0.736 19 H 0.042 0.958 20 H 0.080 0.920 21 H 0.112 0.888 22 H 0.048 0.952 23 H 0.059 0.941 24 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.572 -5.856 -1.843 6.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.182 4.182 3 Si 0.783 3.217 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.198 1.198 7 C -0.577 4.577 8 H 0.067 0.933 9 C -0.001 4.001 10 H 0.025 0.975 11 C -0.173 4.173 12 C -0.017 4.017 13 O -0.304 6.304 14 C -0.030 4.030 15 C 0.025 3.975 16 H 0.096 0.904 17 F -0.206 7.206 18 H 0.074 0.926 19 H 0.061 0.939 20 H 0.099 0.901 21 H 0.130 0.870 22 H 0.066 0.934 23 H 0.077 0.923 24 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.455 -5.871 -1.958 6.205 hybrid contribution 0.380 1.340 0.440 1.461 sum 0.834 -4.531 -1.518 4.850 Atomic orbital electron populations 1.69966 1.06994 1.27555 1.50687 1.25698 0.95807 1.02373 0.94343 0.85559 0.78579 0.79104 0.78464 1.19654 1.20518 1.19809 1.21370 0.92877 0.91880 1.51592 0.93334 1.19281 0.93294 0.92514 0.94983 0.97542 1.22072 1.00224 0.97359 0.97638 1.22820 0.89952 0.86382 1.02501 1.87834 1.48941 1.51916 1.41681 1.23116 0.94353 0.96533 0.88988 1.22461 0.93168 0.98325 0.83591 0.90442 1.92690 1.78446 1.97692 1.51805 0.92636 0.93873 0.90135 0.87036 0.93380 0.92292 0.85941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.79 11.39 21.45 0.24 -51.54 14 2 C 0.02 0.95 5.31 84.65 0.45 1.40 14 3 Si 0.96 43.78 29.54 68.60 2.03 45.80 14 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 14 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 14 6 H -0.27 -12.40 7.11 99.48 0.71 -11.69 14 7 C -0.54 -30.35 8.38 25.60 0.21 -30.13 14 8 H 0.05 2.75 7.75 -2.91 -0.02 2.73 14 9 C 0.02 0.91 1.96 -11.42 -0.02 0.89 14 10 H 0.01 0.36 8.14 -2.39 -0.02 0.34 14 11 C -0.13 -6.18 5.16 30.68 0.16 -6.02 14 12 C 0.06 2.19 6.84 72.01 0.49 2.68 14 13 O -0.38 -13.97 10.77 -148.98 -1.60 -15.58 14 14 C 0.05 1.66 6.58 72.01 0.47 2.13 14 15 C 0.06 2.63 3.40 30.68 0.10 2.73 14 16 H 0.08 3.28 8.14 -2.39 -0.02 3.26 14 17 F -0.23 -10.25 16.88 44.97 0.76 -9.50 14 18 H 0.26 14.19 8.31 -92.71 -0.77 13.42 14 19 H 0.04 1.98 8.14 -2.38 -0.02 1.96 14 20 H 0.08 4.10 6.21 -2.39 -0.01 4.08 14 21 H 0.11 3.45 8.14 -2.39 -0.02 3.43 14 22 H 0.05 1.73 8.14 -2.39 -0.02 1.71 14 23 H 0.06 2.00 8.14 -2.39 -0.02 1.98 14 24 H 0.12 3.46 8.14 -2.39 -0.02 3.44 14 Total: -1.00 -59.91 206.79 4.47 -55.43 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: 1.18 Total: 1.70 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: 1.87 Total: -26.32 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: 0.24 Total: -51.54 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -1.60 Total: -15.58 kcal Atomic # 9 Polarization: -10.25 SS G_CDS: 0.76 Total: -9.50 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -59.91 4.47 -55.43 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259600414.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.338 kcal (2) G-P(sol) polarization free energy of solvation -59.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds