Wall clock time and date at job start Mon Mar 30 2020 02:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48496 * 109.46683 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47426 * 300.00172 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00415 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 H 1.09008 * 108.84652 * 302.60505 * 9 7 2 11 11 C 1.53707 * 108.88627 * 61.18004 * 9 7 2 12 12 S 1.83384 * 104.96813 * 123.62192 * 11 9 7 13 13 C 1.83990 * 95.85402 * 19.74673 * 12 11 9 14 14 C 1.52940 * 108.89015 * 184.16128 * 9 7 2 15 15 H 1.08996 * 109.60134 * 329.03528 * 14 9 7 16 16 F 1.39905 * 109.60126 * 89.17508 * 14 9 7 17 17 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 18 18 H 1.09005 * 110.33671 * 242.49902 * 11 9 7 19 19 H 1.08995 * 110.34224 * 4.74190 * 11 9 7 20 20 H 1.09007 * 111.12506 * 82.55976 * 13 12 11 21 21 H 1.09001 * 111.13309 * 206.69335 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 1 0.5938 -2.5264 0.8688 11 6 0.3945 -2.5793 -1.2744 12 16 0.9183 -4.1304 -2.1005 13 6 1.6633 -4.8980 -0.6035 14 6 2.2533 -3.6496 0.1038 15 1 3.1886 -3.3644 -0.3776 16 9 2.4929 -3.9427 1.4507 17 1 -0.4851 0.8401 0.0004 18 1 -0.6637 -2.6256 -1.0172 19 1 0.5916 -1.7219 -1.9179 20 1 0.9020 -5.3760 0.0131 21 1 2.4478 -5.6050 -0.8734 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259604832.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:21 Heat of formation + Delta-G solvation = -81.121949 kcal Electronic energy + Delta-G solvation = -8774.984161 eV Core-core repulsion = 6883.165571 eV Total energy + Delta-G solvation = -1891.818590 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 176.037 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -48.53631 -37.07319 -33.91650 -30.29634 -27.50818 -24.93969 -21.51794 -18.85522 -17.84512 -17.08029 -16.40629 -16.13847 -15.21535 -14.91607 -14.30932 -14.01235 -13.45918 -13.05791 -12.77283 -12.64782 -12.29716 -12.11703 -11.30481 -11.13139 -11.10205 -10.51793 -8.70717 -8.26152 -6.38274 0.94350 1.36884 1.42272 1.45471 1.53882 2.37215 3.05701 3.43781 3.81469 4.01164 4.26983 4.40718 4.56001 4.69605 4.84293 5.31502 5.51766 5.66330 6.04616 6.67768 7.30381 8.83119 Molecular weight = 176.04amu Principal moments of inertia in cm(-1) A = 0.057217 B = 0.016729 C = 0.014378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.248112 B = 1673.296736 C = 1946.998931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.017 3.983 3 Si 0.962 3.038 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.062 0.938 9 C 0.006 3.994 10 H 0.018 0.982 11 C -0.002 4.002 12 S -0.334 6.334 13 C -0.078 4.078 14 C 0.098 3.902 15 H 0.095 0.905 16 F -0.219 7.219 17 H 0.267 0.733 18 H 0.062 0.938 19 H 0.077 0.923 20 H 0.104 0.896 21 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.012 -5.277 -1.321 6.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.184 4.184 3 Si 0.787 3.213 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.575 4.575 8 H 0.080 0.920 9 C -0.014 4.014 10 H 0.037 0.963 11 C -0.150 4.150 12 S -0.109 6.109 13 C -0.226 4.226 14 C 0.060 3.940 15 H 0.113 0.887 16 F -0.200 7.200 17 H 0.076 0.924 18 H 0.081 0.919 19 H 0.095 0.905 20 H 0.122 0.878 21 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.741 -5.559 -2.442 6.661 hybrid contribution 0.121 1.448 1.303 1.951 sum 2.861 -4.111 -1.140 5.137 Atomic orbital electron populations 1.70050 1.07249 1.27976 1.49932 1.25768 0.95771 1.02749 0.94071 0.85427 0.79121 0.79008 0.77726 1.18899 1.20281 1.20626 1.21436 0.93176 0.90665 1.52196 0.91993 1.19671 0.93562 0.94230 0.93922 0.96341 1.23781 1.00546 0.92503 0.98151 1.87321 1.78131 1.24228 1.21200 1.24891 1.03627 0.99035 0.95056 1.22768 1.01033 0.93548 0.76622 0.88694 1.92738 1.95948 1.94380 1.36966 0.92439 0.91903 0.90456 0.87765 0.84425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.91 12.34 21.45 0.26 -50.65 14 2 C 0.02 0.90 5.06 84.65 0.43 1.33 14 3 Si 0.96 42.24 29.54 68.60 2.03 44.27 14 4 H -0.26 -11.27 7.11 99.48 0.71 -10.57 14 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 14 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 14 7 C -0.54 -28.52 8.21 25.60 0.21 -28.31 14 8 H 0.06 3.23 7.50 -2.91 -0.02 3.21 14 9 C 0.01 0.31 2.33 -11.32 -0.03 0.29 14 10 H 0.02 1.01 8.09 -2.38 -0.02 0.99 14 11 C 0.00 -0.07 5.95 72.22 0.43 0.36 14 12 S -0.33 -12.85 23.23 -56.49 -1.31 -14.17 14 13 C -0.08 -2.56 7.28 72.72 0.53 -2.03 14 14 C 0.10 3.97 3.70 31.31 0.12 4.08 14 15 H 0.10 3.74 7.64 -2.39 -0.02 3.72 14 16 F -0.22 -9.18 17.07 44.97 0.77 -8.41 14 17 H 0.27 14.07 8.31 -92.71 -0.77 13.30 14 18 H 0.06 2.99 8.14 -2.38 -0.02 2.97 14 19 H 0.08 3.94 7.26 -2.39 -0.02 3.92 14 20 H 0.10 3.21 8.14 -2.38 -0.02 3.19 14 21 H 0.14 3.57 8.14 -2.39 -0.02 3.55 14 Total: -1.00 -56.24 199.26 4.65 -51.60 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: 1.22 Total: 1.65 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: 1.69 Total: -24.28 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: 0.26 Total: -50.65 kcal Atomic # 9 Polarization: -9.18 SS G_CDS: 0.77 Total: -8.41 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 16 Polarization: -12.85 SS G_CDS: -1.31 Total: -14.17 kcal Total: -56.24 4.65 -51.60 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259604832.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.527 kcal (2) G-P(sol) polarization free energy of solvation -56.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds