Wall clock time and date at job start Mon Mar 30 2020 02:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 119.99880 * 2 1 4 4 H 1.48503 * 109.47308 * 269.73076 * 3 2 1 5 5 H 1.48503 * 109.47305 * 29.72468 * 3 2 1 6 6 H 1.48494 * 109.47498 * 149.72659 * 3 2 1 7 7 C 1.37876 * 119.99940 * 179.73203 * 2 1 3 8 8 H 1.08002 * 119.99790 * 175.63332 * 7 2 1 9 9 C 1.50696 * 120.00244 * 355.61940 * 7 2 1 10 10 C 1.50698 * 115.55170 * 279.56841 * 9 7 2 11 11 C 1.34670 * 126.59090 * 116.54485 * 10 9 7 12 12 N 1.34129 * 108.01960 * 179.97438 * 11 10 9 13 13 C 1.30496 * 109.25756 * 359.97438 * 12 11 10 14 14 N 1.35048 * 108.69816 * 359.76532 * 13 12 11 15 15 H 0.97006 * 126.39570 * 180.26732 * 14 13 12 16 16 C 1.53003 * 117.49800 * 133.85954 * 9 7 2 17 17 C 1.53002 * 117.49809 * 65.23738 * 9 7 2 18 18 H 0.97003 * 120.00096 * 185.20772 * 1 2 3 19 19 H 1.08000 * 125.99507 * 359.96234 * 11 10 9 20 20 H 1.08001 * 125.65536 * 179.97438 * 13 12 11 21 21 H 1.08995 * 117.49782 * 359.97438 * 16 9 7 22 22 H 1.09001 * 117.49991 * 145.02569 * 16 9 7 23 23 H 1.09003 * 117.49863 * 214.98197 * 17 9 7 24 24 H 1.09001 * 117.49849 * 359.97438 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5023 2.0431 -1.4001 5 1 1.4436 2.6543 0.6942 6 1 3.5437 1.4419 0.7058 7 6 2.0045 -1.1940 0.0056 8 1 3.0822 -1.1957 -0.0656 9 6 1.2544 -2.4967 0.1114 10 6 0.8241 -2.8880 1.5016 11 6 -0.4413 -3.0286 1.9405 12 7 -0.3950 -3.3860 3.2325 13 6 0.8509 -3.4728 3.6107 14 7 1.6443 -3.1753 2.5591 15 1 2.6143 -3.1650 2.5546 16 6 1.6512 -3.6204 -0.8483 17 6 0.3296 -2.8755 -1.0472 18 1 -0.4850 -0.8366 0.0763 19 1 -1.3365 -2.8794 1.3551 20 1 1.1914 -3.7416 4.5997 21 1 2.4545 -3.4172 -1.5564 22 1 1.6012 -4.6429 -0.4742 23 1 -0.5899 -3.4080 -0.8039 24 1 0.2635 -2.1822 -1.8857 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259799101.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:07 Heat of formation + Delta-G solvation = 52.076585 kcal Electronic energy + Delta-G solvation = -10371.557577 eV Core-core repulsion = 8478.512535 eV Total energy + Delta-G solvation = -1893.045042 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.79746 -38.33454 -33.99300 -33.22375 -29.97865 -27.24594 -23.55931 -23.29601 -21.99279 -21.20792 -19.53293 -17.92903 -16.04045 -15.66614 -15.59528 -15.11459 -14.67078 -14.34600 -14.25382 -13.19747 -12.68265 -12.26298 -11.96945 -11.70369 -11.23258 -11.02317 -10.72861 -10.49470 -10.25342 -9.09916 -8.52784 -6.34831 1.33074 1.53558 1.61378 1.77468 2.28897 2.42077 2.56396 3.17600 3.29803 3.87523 4.13796 4.36916 4.39754 4.59563 4.76231 4.78405 4.99240 5.18506 5.37187 5.49542 5.88817 6.07716 6.21070 6.65196 6.75203 7.22604 7.50883 8.84798 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.043468 B = 0.017297 C = 0.015036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.990240 B = 1618.375235 C = 1861.730538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.016 4.016 3 Si 1.112 2.888 4 H -0.274 1.274 5 H -0.290 1.290 6 H -0.271 1.271 7 C -0.587 4.587 8 H 0.051 0.949 9 C 0.047 3.953 10 C 0.052 3.948 11 C -0.077 4.077 12 N -0.531 5.531 13 C 0.170 3.830 14 N -0.557 5.557 15 H 0.428 0.572 16 C -0.163 4.163 17 C -0.168 4.168 18 H 0.271 0.729 19 H 0.145 0.855 20 H 0.251 0.749 21 H 0.090 0.910 22 H 0.090 0.910 23 H 0.082 0.918 24 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.475 -5.046 2.972 8.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.218 4.218 3 Si 0.935 3.065 4 H -0.199 1.199 5 H -0.216 1.216 6 H -0.196 1.196 7 C -0.624 4.624 8 H 0.069 0.931 9 C 0.045 3.955 10 C -0.066 4.066 11 C -0.222 4.222 12 N -0.251 5.251 13 C -0.113 4.113 14 N -0.160 5.160 15 H 0.267 0.733 16 C -0.200 4.200 17 C -0.206 4.206 18 H 0.082 0.918 19 H 0.163 0.837 20 H 0.266 0.734 21 H 0.108 0.892 22 H 0.108 0.892 23 H 0.100 0.900 24 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.525 -3.574 3.408 6.698 hybrid contribution 0.920 -1.387 -0.543 1.751 sum 5.445 -4.961 2.865 7.904 Atomic orbital electron populations 1.70751 1.07817 1.31745 1.45566 1.27061 0.96640 1.05708 0.92410 0.82989 0.74179 0.71727 0.77624 1.19930 1.21646 1.19593 1.21511 0.93742 0.90709 1.56486 0.93097 1.17292 1.00675 0.94565 0.82985 1.21131 0.90600 1.02941 0.91961 1.21794 0.96229 1.11264 0.92959 1.70086 1.21591 1.21033 1.12412 1.25656 0.85431 1.04821 0.95422 1.43072 1.10669 1.52647 1.09607 0.73283 1.22925 0.98084 0.95678 1.03358 1.22700 0.93664 1.02963 1.01244 0.91813 0.83723 0.73363 0.89166 0.89192 0.89973 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.81 13.55 21.45 0.29 -54.52 14 2 C -0.02 -0.89 5.44 84.65 0.46 -0.43 14 3 Si 1.11 48.89 29.91 68.60 2.05 50.94 14 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 14 5 H -0.29 -13.02 7.11 99.48 0.71 -12.31 14 6 H -0.27 -10.97 7.11 99.48 0.71 -10.26 14 7 C -0.59 -31.13 8.80 25.60 0.23 -30.90 14 8 H 0.05 2.66 7.82 -2.91 -0.02 2.64 14 9 C 0.05 2.22 1.44 -53.67 -0.08 2.14 14 10 C 0.05 2.33 6.32 40.95 0.26 2.59 14 11 C -0.08 -3.60 11.14 83.52 0.93 -2.67 14 12 N -0.53 -22.62 11.25 -200.31 -2.25 -24.88 14 13 C 0.17 5.76 13.04 180.26 2.35 8.11 14 14 N -0.56 -20.31 6.15 -186.49 -1.15 -21.46 14 15 H 0.43 12.93 8.96 -92.70 -0.83 12.10 14 16 C -0.16 -6.63 9.94 30.60 0.30 -6.32 14 17 C -0.17 -7.58 8.41 30.60 0.26 -7.32 14 18 H 0.27 16.13 6.29 -92.71 -0.58 15.54 14 19 H 0.15 6.86 7.90 -2.91 -0.02 6.83 14 20 H 0.25 5.32 8.06 -2.91 -0.02 5.30 14 21 H 0.09 3.54 8.14 -2.39 -0.02 3.52 14 22 H 0.09 3.26 8.14 -2.39 -0.02 3.24 14 23 H 0.08 3.50 7.72 -2.39 -0.02 3.48 14 24 H 0.07 3.44 8.14 -2.39 -0.02 3.42 14 Total: -1.00 -66.09 217.88 4.21 -61.88 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.56 Total: 22.83 kcal Atomic # 6 Polarization: -39.52 SS G_CDS: 4.71 Total: -34.81 kcal Atomic # 7 Polarization: -97.74 SS G_CDS: -3.11 Total: -100.85 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: 2.05 Total: 50.94 kcal Total: -66.09 4.21 -61.88 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259799101.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.957 kcal (2) G-P(sol) polarization free energy of solvation -66.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds