Wall clock time and date at job start Mon Mar 30 2020 02:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30724 * 1 3 3 Si 1.86794 * 120.00495 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99997 * 3 2 1 5 5 H 1.48498 * 109.47176 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47446 * 120.00011 * 3 2 1 7 7 C 1.40050 * 119.99742 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.41515 * 119.99648 * 0.27930 * 7 2 1 10 10 N 1.32251 * 126.47969 * 359.74931 * 9 7 2 11 11 O 1.41401 * 108.81758 * 179.97438 * 10 9 7 12 12 C 1.34886 * 109.43656 * 359.97438 * 11 10 9 13 13 C 1.41005 * 145.21151 * 179.97438 * 12 11 10 14 14 C 1.34816 * 107.85369 * 179.39061 * 13 12 11 15 15 N 1.36379 * 109.02056 * 0.49870 * 14 13 12 16 16 H 0.96997 * 125.65355 * 179.57083 * 15 14 13 17 17 C 1.37475 * 108.69215 * 359.59588 * 15 14 13 18 18 H 0.97005 * 119.99621 * 0.02562 * 1 2 3 19 19 H 1.07998 * 126.06716 * 0.02562 * 13 12 11 20 20 H 1.07999 * 125.48424 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2414 1.6176 0.0000 4 1 3.0951 1.6962 -1.2125 5 1 1.2765 2.7464 -0.0006 6 1 3.0951 1.6963 1.2124 7 6 2.0074 -1.2129 0.0005 8 1 3.0875 -1.2129 0.0001 9 6 1.2997 -2.4384 -0.0049 10 7 -0.0143 -2.5875 -0.0061 11 8 -0.3166 -3.9688 -0.0126 12 6 0.8300 -4.6792 -0.0160 13 6 1.3907 -5.9729 -0.0218 14 6 2.7324 -5.8419 -0.0352 15 7 3.0496 -4.5155 -0.0271 16 1 3.9476 -4.1489 -0.0277 17 6 1.8855 -3.7842 -0.0171 18 1 -0.4850 0.8401 -0.0004 19 1 0.8426 -6.9035 -0.0260 20 1 3.4418 -6.6562 -0.0428 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259824807.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:07 Heat of formation + Delta-G solvation = 54.977868 kcal Electronic energy + Delta-G solvation = -9941.425426 eV Core-core repulsion = 7912.673099 eV Total energy + Delta-G solvation = -2028.752327 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 178.048 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.44988 -39.14827 -35.95936 -33.02993 -31.13133 -28.76636 -28.23561 -22.74869 -21.78136 -21.46553 -19.33462 -18.13201 -16.60057 -16.33249 -16.31841 -14.93860 -14.44299 -14.05920 -13.88527 -13.53655 -13.06388 -12.86785 -12.27123 -11.90324 -11.81563 -11.26088 -10.68499 -9.26750 -8.85663 -8.65756 -6.89134 0.89286 1.38688 1.42192 1.55412 2.00334 2.06472 2.15012 2.18470 2.94886 3.24850 4.10517 4.38339 4.61034 4.69334 4.97063 5.15809 5.42973 5.65115 5.93874 6.20906 6.53233 6.67037 6.87023 7.58375 8.34074 Molecular weight = 178.05amu Principal moments of inertia in cm(-1) A = 0.076902 B = 0.013839 C = 0.011777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.011516 B = 2022.816630 C = 2376.978280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.017 3.983 3 Si 1.011 2.989 4 H -0.251 1.251 5 H -0.270 1.270 6 H -0.251 1.251 7 C -0.464 4.464 8 H 0.107 0.893 9 C 0.217 3.783 10 N -0.408 5.408 11 O -0.185 6.185 12 C -0.040 4.040 13 C -0.225 4.225 14 C 0.074 3.926 15 N -0.522 5.522 16 H 0.429 0.571 17 C -0.134 4.134 18 H 0.289 0.711 19 H 0.166 0.834 20 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.112 -4.445 -0.067 11.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.202 4.202 3 Si 0.829 3.171 4 H -0.175 1.175 5 H -0.195 1.195 6 H -0.175 1.175 7 C -0.503 4.503 8 H 0.125 0.875 9 C 0.061 3.939 10 N -0.184 5.184 11 O -0.181 6.181 12 C -0.099 4.099 13 C -0.252 4.252 14 C -0.060 4.060 15 N -0.124 5.124 16 H 0.268 0.732 17 C -0.246 4.246 18 H 0.100 0.900 19 H 0.183 0.817 20 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 8.765 -3.912 -0.066 9.599 hybrid contribution 0.753 0.564 -0.002 0.941 sum 9.518 -3.348 -0.069 10.090 Atomic orbital electron populations 1.69982 1.09667 1.30890 1.32247 1.27227 0.95777 1.05591 0.91566 0.84832 0.78151 0.73534 0.80570 1.17497 1.19486 1.17472 1.19375 0.95060 0.88073 1.47776 0.87505 1.21010 0.90170 0.90785 0.91982 1.81421 1.12604 0.81870 1.42485 1.88757 1.26686 1.17869 1.84745 1.21292 0.87042 0.96414 1.05164 1.20170 0.93542 0.92580 1.18917 1.22737 0.95524 0.84930 1.02839 1.41028 1.06354 1.05546 1.59494 0.73151 1.21680 0.88138 0.92782 1.21983 0.90004 0.81670 0.74362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -46.56 11.97 21.84 0.26 -46.30 14 2 C 0.02 0.91 5.50 85.30 0.47 1.38 14 3 Si 1.01 38.12 29.56 68.60 2.03 40.15 14 4 H -0.25 -8.86 7.11 99.48 0.71 -8.16 14 5 H -0.27 -9.83 7.11 99.48 0.71 -9.12 14 6 H -0.25 -8.85 7.11 99.48 0.71 -8.14 14 7 C -0.46 -25.75 9.45 23.52 0.22 -25.53 14 8 H 0.11 5.19 7.85 -2.91 -0.02 5.17 14 9 C 0.22 13.11 6.94 42.12 0.29 13.40 14 10 N -0.41 -26.97 11.19 -48.63 -0.54 -27.52 14 11 O -0.18 -11.54 12.06 29.10 0.35 -11.19 14 12 C -0.04 -2.10 8.30 22.98 0.19 -1.91 14 13 C -0.23 -8.40 10.83 22.16 0.24 -8.16 14 14 C 0.07 2.10 11.88 83.20 0.99 3.09 14 15 N -0.52 -18.43 6.12 -183.12 -1.12 -19.55 14 16 H 0.43 11.64 8.96 -92.71 -0.83 10.81 14 17 C -0.13 -6.84 8.25 40.53 0.33 -6.51 14 18 H 0.29 15.10 8.29 -92.70 -0.77 14.33 14 19 H 0.17 4.99 8.06 -2.91 -0.02 4.97 14 20 H 0.24 3.28 8.06 -2.91 -0.02 3.26 14 Total: -1.00 -79.70 194.58 4.16 -75.54 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.45 Total: 13.11 kcal Atomic # 6 Polarization: -26.98 SS G_CDS: 2.74 Total: -24.24 kcal Atomic # 7 Polarization: -91.97 SS G_CDS: -1.40 Total: -93.37 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.35 Total: -11.19 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 2.03 Total: 40.15 kcal Total: -79.70 4.16 -75.54 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259824807.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.519 kcal (2) G-P(sol) polarization free energy of solvation -79.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds