Wall clock time and date at job start Mon Mar 30 2020 02:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99979 * 2 1 4 4 H 1.48508 * 109.46603 * 265.02482 * 3 2 1 5 5 H 1.48497 * 109.47225 * 25.02409 * 3 2 1 6 6 H 1.48496 * 109.47159 * 145.02794 * 3 2 1 7 7 C 1.37874 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99927 * 353.61312 * 7 2 1 9 9 C 1.50695 * 120.00118 * 173.61154 * 7 2 1 10 10 C 1.50701 * 115.55251 * 87.49384 * 9 7 2 11 11 C 1.34856 * 125.88573 * 42.57072 * 10 9 7 12 12 C 1.40896 * 107.41501 * 179.97438 * 11 10 9 13 13 C 1.34848 * 107.41944 * 0.02562 * 12 11 10 14 14 N 1.36341 * 125.89362 * 222.54634 * 10 9 7 15 15 H 0.96991 * 125.64010 * 359.97438 * 14 10 9 16 16 C 1.53004 * 117.52300 * 233.19717 * 9 7 2 17 17 C 1.53001 * 117.49917 * 301.82744 * 9 7 2 18 18 H 0.97002 * 119.99544 * 0.02562 * 1 2 3 19 19 H 1.08001 * 126.29511 * 359.97438 * 11 10 9 20 20 H 1.08003 * 126.29075 * 179.72912 * 12 11 10 21 21 H 1.08003 * 125.89454 * 179.97438 * 13 12 11 22 22 H 1.08997 * 117.50141 * 214.97058 * 16 9 7 23 23 H 1.09004 * 117.49395 * 359.97438 * 16 9 7 24 24 H 1.08995 * 117.49706 * 359.97438 * 17 9 7 25 25 H 1.09008 * 117.49971 * 144.97613 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6018 1.9857 -1.3949 5 1 1.3980 2.6808 0.5922 6 1 3.4902 1.4729 0.8025 7 6 2.0045 -1.1940 0.0005 8 1 1.4696 -2.1264 0.1050 9 6 3.5045 -1.1982 -0.1447 10 6 4.2822 -1.0644 1.1392 11 6 4.0061 -1.6931 2.2998 12 6 4.9756 -1.2895 3.2391 13 6 5.8069 -0.4291 2.6169 14 7 5.3866 -0.2874 1.3275 15 1 5.8045 0.2733 0.6554 16 6 4.1057 -2.0726 -1.2469 17 6 4.0946 -0.5502 -1.3988 18 1 -0.4849 0.8401 -0.0004 19 1 3.1915 -2.3798 2.4769 20 1 5.0384 -1.6067 4.2696 21 1 6.6587 0.0628 3.0628 22 1 5.0636 -2.5512 -1.0434 23 1 3.4162 -2.6455 -1.8670 24 1 3.3979 -0.1213 -2.1190 25 1 5.0452 -0.0269 -1.2951 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259830148.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:45 Heat of formation + Delta-G solvation = 50.164066 kcal Electronic energy + Delta-G solvation = -10296.666000 eV Core-core repulsion = 8468.963936 eV Total energy + Delta-G solvation = -1827.702064 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 177.085 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.87453 -38.03091 -34.26919 -31.65317 -29.56832 -27.66392 -23.41404 -22.71558 -21.03706 -20.75668 -19.02197 -17.62070 -16.69350 -15.43491 -14.94829 -14.73804 -14.55186 -14.28796 -13.36518 -13.13375 -12.86382 -12.82795 -12.20263 -11.99859 -11.78088 -11.15459 -10.77508 -10.57331 -9.56975 -8.59215 -8.31804 -6.39331 1.30740 1.37064 1.48764 1.57131 2.28051 2.35963 2.58954 3.08976 3.26603 4.03589 4.26379 4.44269 4.52679 4.72536 4.79258 4.86816 5.03948 5.15103 5.40004 5.48003 5.66975 5.70932 6.19018 6.34801 6.49198 6.69355 6.99560 7.30514 8.83338 Molecular weight = 177.08amu Principal moments of inertia in cm(-1) A = 0.041623 B = 0.019836 C = 0.018260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.537966 B = 1411.228988 C = 1533.052773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.025 3.975 3 Si 0.944 3.056 4 H -0.259 1.259 5 H -0.303 1.303 6 H -0.239 1.239 7 C -0.481 4.481 8 H 0.033 0.967 9 C 0.032 3.968 10 C 0.065 3.935 11 C -0.225 4.225 12 C -0.223 4.223 13 C -0.020 4.020 14 N -0.559 5.559 15 H 0.417 0.583 16 C -0.155 4.155 17 C -0.191 4.191 18 H 0.266 0.734 19 H 0.106 0.894 20 H 0.147 0.853 21 H 0.200 0.800 22 H 0.100 0.900 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.342 2.135 1.282 13.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.173 4.173 3 Si 0.768 3.232 4 H -0.184 1.184 5 H -0.231 1.231 6 H -0.162 1.162 7 C -0.518 4.518 8 H 0.051 0.949 9 C 0.030 3.970 10 C -0.048 4.048 11 C -0.250 4.250 12 C -0.248 4.248 13 C -0.150 4.150 14 N -0.155 5.155 15 H 0.254 0.746 16 C -0.192 4.192 17 C -0.228 4.228 18 H 0.075 0.925 19 H 0.124 0.876 20 H 0.164 0.836 21 H 0.217 0.783 22 H 0.118 0.882 23 H 0.104 0.896 24 H 0.099 0.901 25 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.264 2.322 1.190 13.519 hybrid contribution -0.450 0.713 -0.185 0.863 sum 12.814 3.035 1.005 13.207 Atomic orbital electron populations 1.70044 1.08355 1.28147 1.52005 1.25810 0.95216 1.02945 0.93349 0.85775 0.79869 0.78051 0.79480 1.18359 1.23074 1.16220 1.20268 0.88726 0.93003 1.49849 0.94890 1.17545 0.91735 1.03640 0.84076 1.20098 0.90132 0.97383 0.97181 1.20631 1.02854 1.07246 0.94222 1.21097 0.98743 1.04755 1.00157 1.22253 1.03600 1.04928 0.84252 1.42080 1.23901 1.37538 1.11998 0.74569 1.22901 1.01636 0.92525 1.02184 1.23041 1.01822 0.96215 1.01742 0.92513 0.87592 0.83567 0.78290 0.88202 0.89624 0.90062 0.88037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.74 13.96 21.45 0.30 -59.44 15 2 C 0.02 1.45 5.47 84.65 0.46 1.91 15 3 Si 0.94 44.69 25.39 68.60 1.74 46.44 15 4 H -0.26 -11.36 7.08 99.48 0.70 -10.66 15 5 H -0.30 -14.70 7.11 99.48 0.71 -14.00 15 6 H -0.24 -10.46 6.06 99.48 0.60 -9.86 15 7 C -0.48 -27.76 9.14 25.60 0.23 -27.52 15 8 H 0.03 2.14 8.06 -2.91 -0.02 2.12 15 9 C 0.03 1.47 1.32 -53.67 -0.07 1.40 15 10 C 0.07 2.79 5.32 41.08 0.22 3.01 15 11 C -0.23 -9.91 10.46 22.14 0.23 -9.68 15 12 C -0.22 -7.86 10.86 22.14 0.24 -7.62 15 13 C -0.02 -0.61 11.94 83.21 0.99 0.38 15 14 N -0.56 -18.84 5.60 -182.75 -1.02 -19.86 15 15 H 0.42 11.49 7.93 -92.72 -0.73 10.76 15 16 C -0.15 -6.05 9.94 30.60 0.30 -5.75 15 17 C -0.19 -7.41 7.67 30.59 0.23 -7.17 15 18 H 0.27 15.77 8.31 -92.71 -0.77 15.00 15 19 H 0.11 5.03 8.06 -2.91 -0.02 5.00 15 20 H 0.15 4.35 8.06 -2.91 -0.02 4.33 15 21 H 0.20 3.96 8.06 -2.91 -0.02 3.94 15 22 H 0.10 3.37 8.14 -2.39 -0.02 3.35 15 23 H 0.09 3.42 8.14 -2.39 -0.02 3.40 15 24 H 0.08 3.37 7.47 -2.39 -0.02 3.35 15 25 H 0.10 3.18 7.13 -2.38 -0.02 3.17 15 Total: -1.00 -68.23 216.65 4.21 -64.02 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.34 Total: 19.89 kcal Atomic # 6 Polarization: -53.90 SS G_CDS: 2.85 Total: -51.05 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -0.72 Total: -79.30 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.74 Total: 46.44 kcal Total: -68.23 4.21 -64.02 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259830148.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.186 kcal (2) G-P(sol) polarization free energy of solvation -68.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds