Wall clock time and date at job start Mon Mar 30 2020 02:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86809 * 119.99761 * 2 1 4 4 H 1.48496 * 109.47115 * 264.78720 * 3 2 1 5 5 H 1.48502 * 109.46716 * 24.78689 * 3 2 1 6 6 H 1.48501 * 109.47059 * 144.78572 * 3 2 1 7 7 C 1.37872 * 120.00589 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99273 * 359.02621 * 7 2 1 9 9 C 1.50696 * 120.00572 * 179.01898 * 7 2 1 10 10 H 1.09001 * 110.37783 * 327.52464 * 9 7 2 11 11 C 1.54440 * 110.33129 * 89.72881 * 9 7 2 12 12 C 1.54430 * 101.99577 * 93.17205 * 11 9 7 13 13 C 1.51319 * 104.99955 * 25.69662 * 12 11 9 14 14 N 1.35217 * 141.94703 * 163.06314 * 13 12 11 15 15 H 0.97009 * 126.03372 * 0.04724 * 14 13 12 16 16 N 1.39999 * 107.93807 * 180.29751 * 14 13 12 17 17 C 1.30732 * 108.21227 * 359.56163 * 16 14 13 18 18 C 1.35130 * 110.30658 * 343.10420 * 13 12 11 19 19 H 0.97001 * 120.00518 * 359.97438 * 1 2 3 20 20 H 1.09008 * 110.92567 * 211.33199 * 11 9 7 21 21 H 1.08997 * 110.92663 * 334.94280 * 11 9 7 22 22 H 1.09005 * 110.31387 * 266.82866 * 12 11 9 23 23 H 1.08998 * 110.35363 * 144.59695 * 12 11 9 24 24 H 1.08001 * 125.87906 * 180.15637 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.6067 1.9829 -1.3942 5 1 1.3956 2.6820 0.5870 6 1 3.4872 1.4746 0.8073 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1292 0.0168 9 6 3.5114 -1.1940 -0.0218 10 1 3.8827 -0.3370 -0.5838 11 6 4.0694 -1.1742 1.4181 12 6 4.2635 -2.6786 1.7079 13 6 4.4514 -3.3180 0.3494 14 7 4.9007 -4.4476 -0.2428 15 1 5.2646 -5.2239 0.2111 16 7 4.7533 -4.2968 -1.6268 17 6 4.2257 -3.1228 -1.8560 18 6 4.0285 -2.4825 -0.6248 19 1 -0.4851 0.8400 0.0004 20 1 5.0209 -0.6440 1.4596 21 1 3.3500 -0.7336 2.1084 22 1 3.3802 -3.0863 2.1995 23 1 5.1477 -2.8346 2.3258 24 1 3.9873 -2.7147 -2.8271 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259881197.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:18 Heat of formation + Delta-G solvation = 76.952811 kcal Electronic energy + Delta-G solvation = -10299.004685 eV Core-core repulsion = 8407.038357 eV Total energy + Delta-G solvation = -1891.966328 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.78454 -35.78102 -32.27300 -30.92585 -27.76598 -27.40874 -23.50134 -21.14705 -20.23333 -18.52325 -16.87267 -16.35105 -14.70539 -13.97085 -13.58359 -13.24886 -12.82910 -12.25855 -11.84851 -11.36159 -11.02709 -10.83566 -10.50610 -10.05620 -9.89837 -9.58947 -9.21191 -8.84985 -8.52421 -7.39165 -6.03862 -4.02637 2.52390 3.29810 3.32128 3.40406 3.42465 3.61939 4.45123 5.13634 5.33285 5.55264 5.65764 5.80555 6.08630 6.20981 6.43788 6.68292 6.80572 6.91641 7.11231 7.30137 7.48859 7.77920 7.94455 8.32394 8.59122 9.02646 9.58423 11.09384 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.059309 B = 0.015001 C = 0.014061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.991820 B = 1866.065458 C = 1990.783358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.070 3.930 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.291 1.291 6 H -0.262 1.262 7 C -0.499 4.499 8 H 0.071 0.929 9 C 0.081 3.919 10 H 0.035 0.965 11 C -0.117 4.117 12 C -0.029 4.029 13 C 0.030 3.970 14 N -0.475 5.475 15 H 0.427 0.573 16 N -0.310 5.310 17 C 0.065 3.935 18 C -0.201 4.201 19 H 0.263 0.737 20 H 0.047 0.953 21 H 0.078 0.922 22 H 0.082 0.918 23 H 0.058 0.942 24 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.920 -2.974 2.335 9.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.186 1.186 7 C -0.536 4.536 8 H 0.089 0.911 9 C 0.061 3.939 10 H 0.053 0.947 11 C -0.156 4.156 12 C -0.069 4.069 13 C -0.097 4.097 14 N -0.183 5.183 15 H 0.268 0.732 16 N -0.133 5.133 17 C -0.120 4.120 18 C -0.212 4.212 19 H 0.073 0.927 20 H 0.066 0.934 21 H 0.097 0.903 22 H 0.100 0.900 23 H 0.077 0.923 24 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 9.169 -3.904 1.781 10.123 hybrid contribution 0.135 1.099 0.467 1.201 sum 9.304 -2.805 2.248 9.974 Atomic orbital electron populations 1.69898 1.06331 1.26921 1.50870 1.25032 0.94660 0.98890 0.94514 0.86891 0.80335 0.83647 0.78894 1.20200 1.21691 1.18623 1.20879 0.88104 0.94341 1.50321 0.91064 1.18154 0.96089 0.89619 0.90005 0.94690 1.22743 0.99485 0.92560 1.00785 1.20608 1.00777 0.96141 0.89329 1.21938 1.00478 0.88323 0.98988 1.45519 1.53367 1.14815 1.04597 0.73154 1.77189 1.25278 1.19872 0.90916 1.23280 0.98175 0.91419 0.99109 1.21412 1.06986 1.01310 0.91468 0.92683 0.93419 0.90298 0.89965 0.92327 0.80627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.96 55.43 0.77 -26.46 14 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 14 3 Si 0.88 20.89 26.73 -169.99 -4.54 16.35 14 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 14 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 14 6 H -0.26 -5.84 6.67 56.52 0.38 -5.46 14 7 C -0.50 -13.77 8.81 -34.44 -0.30 -14.08 14 8 H 0.07 2.20 8.06 -52.48 -0.42 1.78 14 9 C 0.08 1.90 2.31 -91.85 -0.21 1.69 14 10 H 0.04 0.82 6.07 -51.93 -0.32 0.51 14 11 C -0.12 -2.33 5.91 -25.23 -0.15 -2.48 14 12 C -0.03 -0.51 6.78 -26.83 -0.18 -0.69 14 13 C 0.03 0.58 8.07 -81.90 -0.66 -0.08 14 14 N -0.47 -8.34 7.36 33.64 0.25 -8.09 14 15 H 0.43 5.74 8.96 -182.67 -1.64 4.10 14 16 N -0.31 -6.06 12.69 30.67 0.39 -5.67 14 17 C 0.07 1.33 12.03 -17.29 -0.21 1.12 14 18 C -0.20 -4.41 6.20 -104.68 -0.65 -5.06 14 19 H 0.26 7.46 8.31 -40.82 -0.34 7.12 14 20 H 0.05 0.85 8.14 -51.92 -0.42 0.43 14 21 H 0.08 1.61 7.89 -51.93 -0.41 1.20 14 22 H 0.08 1.43 8.14 -51.93 -0.42 1.01 14 23 H 0.06 0.83 8.14 -51.93 -0.42 0.40 14 24 H 0.18 3.12 8.06 -52.49 -0.42 2.70 14 LS Contribution 208.97 15.07 3.15 3.15 Total: -1.00 -31.23 208.97 -6.08 -37.31 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -3.64 Total: 1.10 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -2.46 Total: -17.68 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 1.41 Total: -40.23 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.54 Total: 16.35 kcal Total LS contribution 3.15 Total: 3.15 kcal Total: -31.23 -6.08 -37.31 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259881197.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.264 kcal (2) G-P(sol) polarization free energy of solvation -31.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds