Wall clock time and date at job start Mon Mar 30 2020 02:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86809 * 119.99761 * 2 1 4 4 H 1.48496 * 109.47115 * 264.78720 * 3 2 1 5 5 H 1.48502 * 109.46716 * 24.78689 * 3 2 1 6 6 H 1.48501 * 109.47059 * 144.78572 * 3 2 1 7 7 C 1.37872 * 120.00589 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99273 * 359.02621 * 7 2 1 9 9 C 1.50696 * 120.00572 * 179.01898 * 7 2 1 10 10 H 1.09001 * 110.37783 * 327.52464 * 9 7 2 11 11 C 1.54440 * 110.33129 * 89.72881 * 9 7 2 12 12 C 1.54430 * 101.99577 * 93.17205 * 11 9 7 13 13 C 1.51319 * 104.99955 * 25.69662 * 12 11 9 14 14 N 1.35217 * 141.94703 * 163.06314 * 13 12 11 15 15 H 0.97009 * 126.03372 * 0.04724 * 14 13 12 16 16 N 1.39999 * 107.93807 * 180.29751 * 14 13 12 17 17 C 1.30732 * 108.21227 * 359.56163 * 16 14 13 18 18 C 1.35130 * 110.30658 * 343.10420 * 13 12 11 19 19 H 0.97001 * 120.00518 * 359.97438 * 1 2 3 20 20 H 1.09008 * 110.92567 * 211.33199 * 11 9 7 21 21 H 1.08997 * 110.92663 * 334.94280 * 11 9 7 22 22 H 1.09005 * 110.31387 * 266.82866 * 12 11 9 23 23 H 1.08998 * 110.35363 * 144.59695 * 12 11 9 24 24 H 1.08001 * 125.87906 * 180.15637 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.6067 1.9829 -1.3942 5 1 1.3956 2.6820 0.5870 6 1 3.4872 1.4746 0.8073 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1292 0.0168 9 6 3.5114 -1.1940 -0.0218 10 1 3.8827 -0.3370 -0.5838 11 6 4.0694 -1.1742 1.4181 12 6 4.2635 -2.6786 1.7079 13 6 4.4514 -3.3180 0.3494 14 7 4.9007 -4.4476 -0.2428 15 1 5.2646 -5.2239 0.2111 16 7 4.7533 -4.2968 -1.6268 17 6 4.2257 -3.1228 -1.8560 18 6 4.0285 -2.4825 -0.6248 19 1 -0.4851 0.8400 0.0004 20 1 5.0209 -0.6440 1.4596 21 1 3.3500 -0.7336 2.1084 22 1 3.3802 -3.0863 2.1995 23 1 5.1477 -2.8346 2.3258 24 1 3.9873 -2.7147 -2.8271 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259881197.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:18 Heat of formation + Delta-G solvation = 55.197953 kcal Electronic energy + Delta-G solvation = -10299.948047 eV Core-core repulsion = 8407.038357 eV Total energy + Delta-G solvation = -1892.909689 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.32144 -37.41909 -34.33199 -32.49337 -29.58277 -28.94522 -25.38182 -22.69615 -21.83719 -20.13797 -18.91286 -17.95515 -16.39248 -15.80406 -15.07951 -14.80407 -14.71812 -14.00804 -13.43478 -13.12327 -12.73131 -12.52642 -12.12462 -11.79373 -11.66757 -11.26561 -11.21477 -10.63942 -10.33328 -9.01493 -8.20200 -6.23743 1.00490 1.44910 1.45419 1.57712 1.89829 1.99752 2.44223 3.15334 3.75364 4.02570 4.16061 4.41038 4.55215 4.81579 4.88615 5.10683 5.20615 5.32636 5.49843 5.61043 5.78606 5.85318 6.42718 6.57961 6.80504 6.83102 7.41131 8.96942 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.059309 B = 0.015001 C = 0.014061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.991820 B = 1866.065458 C = 1990.783358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.010 3.990 3 Si 0.943 3.057 4 H -0.273 1.273 5 H -0.292 1.292 6 H -0.231 1.231 7 C -0.497 4.497 8 H 0.020 0.980 9 C 0.077 3.923 10 H 0.033 0.967 11 C -0.116 4.116 12 C -0.024 4.024 13 C 0.046 3.954 14 N -0.458 5.458 15 H 0.447 0.553 16 N -0.317 5.317 17 C 0.052 3.948 18 C -0.249 4.249 19 H 0.264 0.736 20 H 0.076 0.924 21 H 0.069 0.931 22 H 0.080 0.920 23 H 0.105 0.895 24 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.298 -2.756 3.257 12.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.186 4.186 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.218 1.218 6 H -0.153 1.153 7 C -0.535 4.535 8 H 0.038 0.962 9 C 0.056 3.944 10 H 0.051 0.949 11 C -0.154 4.154 12 C -0.063 4.063 13 C -0.083 4.083 14 N -0.169 5.169 15 H 0.292 0.708 16 N -0.140 5.140 17 C -0.132 4.132 18 C -0.260 4.260 19 H 0.073 0.927 20 H 0.094 0.906 21 H 0.088 0.912 22 H 0.098 0.902 23 H 0.124 0.876 24 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 11.586 -3.732 2.711 12.470 hybrid contribution -0.638 0.895 0.161 1.111 sum 10.948 -2.837 2.872 11.669 Atomic orbital electron populations 1.70067 1.08478 1.27980 1.53132 1.25933 0.95372 1.03077 0.94230 0.85800 0.79891 0.78199 0.79444 1.19807 1.21814 1.15345 1.21061 0.90758 0.92277 1.49386 0.96205 1.18124 0.92975 0.90609 0.92652 0.94912 1.22651 1.00311 0.94766 0.97681 1.20652 1.02843 0.94087 0.88764 1.22222 0.98626 0.88076 0.99392 1.45531 1.52259 1.15051 1.04025 0.70760 1.77153 1.25431 1.19448 0.91986 1.23584 0.98307 0.91633 0.99691 1.21502 1.09703 1.01857 0.92949 0.92698 0.90556 0.91202 0.90153 0.87637 0.79286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.56 13.96 21.44 0.30 -59.27 14 2 C 0.01 0.57 5.47 84.65 0.46 1.03 14 3 Si 0.94 42.76 26.73 68.60 1.83 44.60 14 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 14 5 H -0.29 -13.19 7.11 99.48 0.71 -12.49 14 6 H -0.23 -9.23 6.67 99.48 0.66 -8.56 14 7 C -0.50 -28.02 8.81 25.60 0.23 -27.79 14 8 H 0.02 1.28 8.06 -2.91 -0.02 1.25 14 9 C 0.08 3.49 2.31 -11.59 -0.03 3.46 14 10 H 0.03 1.48 6.07 -2.39 -0.01 1.47 14 11 C -0.12 -4.25 5.91 31.57 0.19 -4.07 14 12 C -0.02 -0.76 6.78 30.53 0.21 -0.56 14 13 C 0.05 1.67 8.07 41.52 0.34 2.00 14 14 N -0.46 -14.88 7.36 -47.47 -0.35 -15.23 14 15 H 0.45 10.53 8.96 -213.37 -1.91 8.62 14 16 N -0.32 -11.87 12.69 -56.88 -0.72 -12.59 14 17 C 0.05 2.10 12.03 85.33 1.03 3.12 14 18 C -0.25 -10.64 6.20 -19.90 -0.12 -10.76 14 19 H 0.26 15.42 8.31 -92.71 -0.77 14.65 14 20 H 0.08 2.39 8.14 -2.38 -0.02 2.37 14 21 H 0.07 2.69 7.89 -2.39 -0.02 2.67 14 22 H 0.08 2.59 8.14 -2.38 -0.02 2.57 14 23 H 0.11 2.39 8.14 -2.39 -0.02 2.37 14 24 H 0.19 6.67 8.06 -2.91 -0.02 6.65 14 Total: -1.00 -68.51 208.97 2.61 -65.90 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -0.74 Total: 10.15 kcal Atomic # 6 Polarization: -35.85 SS G_CDS: 2.29 Total: -33.56 kcal Atomic # 7 Polarization: -86.32 SS G_CDS: -0.77 Total: -87.09 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.83 Total: 44.60 kcal Total: -68.51 2.61 -65.90 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259881197.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.094 kcal (2) G-P(sol) polarization free energy of solvation -68.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds