Wall clock time and date at job start Mon Mar 30 2020 02:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09002 * 110.29729 * 58.11926 * 9 7 2 11 11 C 1.54443 * 110.33518 * 180.27573 * 9 7 2 12 12 C 1.54438 * 101.99052 * 93.16622 * 11 9 7 13 13 C 1.51359 * 105.01100 * 25.72358 * 12 11 9 14 14 C 1.40173 * 141.89825 * 163.04318 * 13 12 11 15 15 N 1.30732 * 108.24560 * 180.02562 * 14 13 12 16 16 N 1.40003 * 108.21386 * 359.97438 * 15 14 13 17 17 H 0.96998 * 126.03451 * 180.02562 * 16 15 14 18 18 C 1.35139 * 110.24538 * 343.06969 * 13 12 11 19 19 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 20 20 H 1.08996 * 110.92881 * 211.33058 * 11 9 7 21 21 H 1.08993 * 110.93042 * 334.95413 * 11 9 7 22 22 H 1.08998 * 110.33730 * 144.60834 * 12 11 9 23 23 H 1.09003 * 110.32937 * 266.84796 * 12 11 9 24 24 H 1.08004 * 125.87415 * 0.04446 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.5907 -2.5583 -0.8598 11 6 2.2370 -3.6879 0.0105 12 6 2.3778 -3.9814 1.5202 13 6 1.0919 -3.4772 2.1392 14 6 0.3160 -3.5731 3.3027 15 7 -0.7439 -2.8230 3.1508 16 7 -0.6787 -2.2240 1.8871 17 1 -1.3334 -1.6163 1.5092 18 6 0.4579 -2.6427 1.2860 19 1 -0.4850 0.8400 0.0004 20 1 1.8161 -4.5450 -0.5150 21 1 3.1954 -3.4008 -0.4219 22 1 2.4849 -5.0528 1.6894 23 1 3.2323 -3.4446 1.9323 24 1 0.5531 -4.1647 4.1746 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259882939.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:25 Heat of formation + Delta-G solvation = 48.925815 kcal Electronic energy + Delta-G solvation = -10449.736675 eV Core-core repulsion = 8556.555005 eV Total energy + Delta-G solvation = -1893.181670 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.07369 -37.24598 -34.47737 -31.97821 -29.40559 -28.42887 -25.74088 -22.49689 -21.59877 -20.10165 -18.83030 -17.47570 -16.45566 -15.88184 -14.90474 -14.65488 -14.26407 -13.78408 -13.41635 -12.99750 -12.87157 -12.42620 -12.24564 -11.99826 -11.54345 -11.19826 -11.11804 -10.61724 -10.13093 -8.86985 -8.24528 -6.34104 1.32865 1.40091 1.42655 1.51256 2.15066 2.22690 2.39158 3.09449 4.01278 4.29264 4.35381 4.57060 4.72805 4.88095 5.13058 5.25009 5.36952 5.44983 5.56809 5.72942 5.79941 6.13082 6.18711 6.66831 6.85205 7.10373 7.34538 8.83429 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.047862 B = 0.017908 C = 0.014941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.878825 B = 1563.201061 C = 1873.535777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.959 3.041 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.291 1.291 7 C -0.515 4.515 8 H 0.068 0.932 9 C 0.091 3.909 10 H 0.011 0.989 11 C -0.104 4.104 12 C -0.019 4.019 13 C -0.323 4.323 14 C 0.061 3.939 15 N -0.352 5.352 16 N -0.460 5.460 17 H 0.433 0.567 18 C 0.119 3.881 19 H 0.263 0.737 20 H 0.070 0.930 21 H 0.079 0.921 22 H 0.081 0.919 23 H 0.061 0.939 24 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.552 -5.037 1.616 6.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.785 3.215 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.217 1.217 7 C -0.553 4.553 8 H 0.087 0.913 9 C 0.071 3.929 10 H 0.029 0.971 11 C -0.142 4.142 12 C -0.057 4.057 13 C -0.334 4.334 14 C -0.123 4.123 15 N -0.176 5.176 16 N -0.165 5.165 17 H 0.277 0.723 18 C -0.013 4.013 19 H 0.072 0.928 20 H 0.089 0.911 21 H 0.098 0.902 22 H 0.100 0.900 23 H 0.079 0.921 24 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 2.318 -4.523 2.182 5.531 hybrid contribution 0.278 1.349 -0.492 1.462 sum 2.596 -3.174 1.690 4.435 Atomic orbital electron populations 1.69875 1.07269 1.27589 1.50852 1.25765 0.95795 1.02633 0.94419 0.85473 0.79459 0.79382 0.77194 1.18566 1.20372 1.21733 1.21497 0.93451 0.90480 1.49860 0.91345 1.18254 0.91742 0.95153 0.87755 0.97083 1.22377 0.99245 0.96273 0.96263 1.20197 0.91940 1.00092 0.93454 1.21414 1.03573 1.11255 0.97170 1.23645 0.91464 0.98373 0.98840 1.77077 1.24890 1.16549 0.99038 1.45890 1.19722 1.38800 1.12081 0.72323 1.22940 0.86455 0.91675 1.00260 0.92777 0.91114 0.90192 0.90046 0.92090 0.77508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.17 11.82 21.45 0.25 -49.92 14 2 C 0.01 0.71 5.33 84.65 0.45 1.16 14 3 Si 0.96 42.61 29.54 68.60 2.03 44.63 14 4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 14 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 14 6 H -0.29 -13.14 7.11 99.48 0.71 -12.44 14 7 C -0.51 -26.94 8.50 25.60 0.22 -26.72 14 8 H 0.07 3.46 7.59 -2.91 -0.02 3.44 14 9 C 0.09 4.44 2.78 -11.60 -0.03 4.41 14 10 H 0.01 0.59 8.14 -2.39 -0.02 0.57 14 11 C -0.10 -3.93 6.63 31.57 0.21 -3.72 14 12 C -0.02 -0.67 6.78 30.55 0.21 -0.46 14 13 C -0.32 -13.85 6.90 -19.90 -0.14 -13.99 14 14 C 0.06 2.45 12.03 85.33 1.03 3.48 14 15 N -0.35 -15.93 12.69 -56.87 -0.72 -16.65 14 16 N -0.46 -22.39 7.14 -47.46 -0.34 -22.73 14 17 H 0.43 21.08 8.33 -213.39 -1.78 19.30 14 18 C 0.12 5.81 6.56 41.52 0.27 6.08 14 19 H 0.26 13.80 8.31 -92.71 -0.77 13.03 14 20 H 0.07 2.37 8.14 -2.39 -0.02 2.35 14 21 H 0.08 2.84 7.75 -2.39 -0.02 2.82 14 22 H 0.08 2.37 8.14 -2.39 -0.02 2.35 14 23 H 0.06 2.16 8.14 -2.39 -0.02 2.14 14 24 H 0.21 6.15 8.06 -2.91 -0.02 6.13 14 Total: -1.00 -59.38 210.61 2.87 -56.52 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -0.57 Total: 17.91 kcal Atomic # 6 Polarization: -31.97 SS G_CDS: 2.21 Total: -29.76 kcal Atomic # 7 Polarization: -88.50 SS G_CDS: -0.81 Total: -89.30 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -59.38 2.87 -56.52 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259882939.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.444 kcal (2) G-P(sol) polarization free energy of solvation -59.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds