Wall clock time and date at job start Mon Mar 30 2020 02:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47090 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47275 * 300.00344 * 3 2 1 6 6 H 1.48501 * 109.47146 * 60.00187 * 3 2 1 7 7 C 1.37877 * 120.00336 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00328 * 185.93152 * 7 2 1 9 9 C 1.50710 * 119.99335 * 6.20520 * 7 2 1 10 10 C 1.50697 * 115.54947 * 275.08151 * 9 7 2 11 11 C 1.34515 * 125.78947 * 294.54513 * 10 9 7 12 12 C 1.41383 * 106.84057 * 179.88926 * 11 10 9 13 13 C 1.34515 * 106.83687 * 0.37496 * 12 11 10 14 14 O 1.34298 * 108.42565 * 359.76663 * 13 12 11 15 15 C 1.53000 * 117.49674 * 129.41244 * 9 7 2 16 16 C 1.52995 * 117.49731 * 60.75417 * 9 7 2 17 17 H 0.97005 * 119.99471 * 357.02601 * 1 2 3 18 18 H 1.08000 * 126.57932 * 0.02562 * 11 10 9 19 19 H 1.07997 * 126.58149 * 180.11818 * 12 11 10 20 20 H 1.08001 * 125.78623 * 179.79142 * 13 12 11 21 21 H 1.09006 * 117.50013 * 359.97438 * 15 9 7 22 22 H 1.09004 * 117.49806 * 145.01393 * 15 9 7 23 23 H 1.09000 * 117.49805 * 214.97355 * 16 9 7 24 24 H 1.08996 * 117.50169 * 0.02562 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0802 -1.1966 0.0961 9 6 1.2575 -2.4953 -0.1422 10 6 0.7046 -3.0698 1.1365 11 6 1.4310 -3.5192 2.1757 12 6 0.5133 -3.9638 3.1551 13 6 -0.7188 -3.7672 2.6523 14 8 -0.5968 -3.2254 1.4295 15 6 1.7496 -3.4802 -1.2046 16 6 0.4458 -2.7081 -1.4214 17 1 -0.4849 0.8390 0.0436 18 1 2.5084 -3.5352 2.2489 19 1 0.7551 -4.3847 4.1198 20 1 -1.6485 -4.0043 3.1481 21 1 2.6133 -3.1869 -1.8014 22 1 1.6731 -4.5438 -0.9788 23 1 -0.4880 -3.2642 -1.3382 24 1 0.4523 -1.9073 -2.1608 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259893244.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:18 Heat of formation + Delta-G solvation = 18.660443 kcal Electronic energy + Delta-G solvation = -10321.737015 eV Core-core repulsion = 8394.950190 eV Total energy + Delta-G solvation = -1926.786826 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.073 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.14083 -38.10084 -34.08860 -33.56806 -29.96994 -27.67162 -23.33408 -23.18493 -22.03959 -20.77305 -18.80536 -17.47743 -16.78053 -16.39414 -15.83113 -15.08193 -14.27859 -13.48094 -13.43219 -13.27478 -13.05871 -12.89010 -12.39051 -12.12938 -11.69457 -11.22858 -10.64937 -10.55958 -10.22715 -9.00621 -8.15605 -6.34221 1.16704 1.40622 1.42318 1.54212 1.97691 2.33860 2.46606 3.16026 3.47682 4.07635 4.37425 4.40344 4.51975 4.59879 4.89326 4.91785 5.16211 5.20243 5.33289 5.53053 5.64064 5.72997 5.92850 6.22186 6.63659 6.73427 7.36043 8.90177 Molecular weight = 178.07amu Principal moments of inertia in cm(-1) A = 0.045959 B = 0.016517 C = 0.014708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.095097 B = 1694.840240 C = 1903.329691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.024 3.976 3 Si 0.961 3.039 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.282 1.282 7 C -0.511 4.511 8 H 0.065 0.935 9 C 0.062 3.938 10 C 0.055 3.945 11 C -0.256 4.256 12 C -0.216 4.216 13 C -0.083 4.083 14 O -0.199 6.199 15 C -0.160 4.160 16 C -0.158 4.158 17 H 0.262 0.738 18 H 0.141 0.859 19 H 0.171 0.829 20 H 0.231 0.769 21 H 0.100 0.900 22 H 0.090 0.910 23 H 0.069 0.931 24 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.823 -5.030 2.640 5.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.786 3.214 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.208 1.208 7 C -0.548 4.548 8 H 0.083 0.917 9 C 0.061 3.939 10 C 0.005 3.995 11 C -0.275 4.275 12 C -0.235 4.235 13 C -0.150 4.150 14 O -0.096 6.096 15 C -0.197 4.197 16 C -0.195 4.195 17 H 0.071 0.929 18 H 0.159 0.841 19 H 0.189 0.811 20 H 0.247 0.753 21 H 0.118 0.882 22 H 0.109 0.891 23 H 0.087 0.913 24 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.426 -4.837 2.405 5.419 hybrid contribution 0.236 0.949 0.274 1.016 sum 0.662 -3.888 2.679 4.768 Atomic orbital electron populations 1.70180 1.07422 1.27478 1.48396 1.25863 0.95658 1.02609 0.93650 0.85459 0.79309 0.79006 0.77650 1.18536 1.20185 1.20843 1.20665 0.92949 0.88977 1.52233 0.91727 1.17287 0.99245 0.94585 0.82737 1.22823 0.79627 0.97784 0.99302 1.21549 1.00682 1.09943 0.95336 1.22029 0.92256 1.07345 1.01846 1.24650 1.01450 1.03732 0.85128 1.84064 1.28957 1.63488 1.33061 1.23088 0.97908 0.96118 1.02598 1.22466 0.93635 1.01489 1.01925 0.92900 0.84132 0.81135 0.75271 0.88186 0.89129 0.91270 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.61 12.93 21.45 0.28 -52.34 14 2 C 0.02 1.34 5.39 84.66 0.46 1.80 14 3 Si 0.96 43.31 29.54 68.60 2.03 45.34 14 4 H -0.26 -11.28 7.11 99.48 0.71 -10.58 14 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 14 6 H -0.28 -12.62 7.11 99.48 0.71 -11.91 14 7 C -0.51 -28.32 8.82 25.60 0.23 -28.10 14 8 H 0.06 3.50 7.82 -2.91 -0.02 3.48 14 9 C 0.06 3.20 1.78 -53.67 -0.10 3.11 14 10 C 0.06 2.78 6.32 24.83 0.16 2.94 14 11 C -0.26 -11.40 10.81 22.19 0.24 -11.16 14 12 C -0.22 -8.02 10.91 22.19 0.24 -7.77 14 13 C -0.08 -3.14 12.09 66.97 0.81 -2.33 14 14 O -0.20 -9.68 10.63 -2.46 -0.03 -9.71 14 15 C -0.16 -6.90 9.94 30.62 0.30 -6.60 14 16 C -0.16 -7.67 9.44 30.62 0.29 -7.38 14 17 H 0.26 14.54 8.31 -92.70 -0.77 13.77 14 18 H 0.14 5.90 8.06 -2.91 -0.02 5.88 14 19 H 0.17 4.86 8.06 -2.91 -0.02 4.84 14 20 H 0.23 6.10 8.06 -2.91 -0.02 6.08 14 21 H 0.10 4.01 8.14 -2.38 -0.02 3.99 14 22 H 0.09 3.49 8.14 -2.39 -0.02 3.47 14 23 H 0.07 3.28 8.14 -2.39 -0.02 3.26 14 24 H 0.07 3.63 8.14 -2.39 -0.02 3.61 14 Total: -1.00 -63.81 222.79 6.09 -57.73 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 1.18 Total: 14.48 kcal Atomic # 6 Polarization: -58.12 SS G_CDS: 2.63 Total: -55.49 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: 0.28 Total: -52.34 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -0.03 Total: -9.71 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -63.81 6.09 -57.73 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259893244.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.388 kcal (2) G-P(sol) polarization free energy of solvation -63.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds