Wall clock time and date at job start Mon Mar 30 2020 01:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99982 * 2 1 4 4 H 1.48500 * 109.47009 * 270.00259 * 3 2 1 5 5 H 1.48498 * 109.47328 * 29.99614 * 3 2 1 6 6 H 1.48498 * 109.47214 * 149.99928 * 3 2 1 7 7 C 1.37872 * 119.99551 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99785 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00374 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.53775 * 60.09826 * 9 7 2 11 11 C 1.53035 * 109.50671 * 299.99767 * 9 7 2 12 12 N 1.46846 * 109.52744 * 180.87877 * 11 9 7 13 13 C 1.46846 * 111.19780 * 61.74478 * 12 11 9 14 14 C 1.53032 * 109.52443 * 298.25976 * 13 12 11 15 15 C 1.53123 * 109.28121 * 59.17535 * 14 13 12 16 16 H 1.08995 * 109.52691 * 182.44257 * 15 14 13 17 17 F 1.39900 * 109.52042 * 62.25477 * 15 14 13 18 18 H 0.97000 * 120.00247 * 0.02562 * 1 2 3 19 19 H 1.09008 * 109.45841 * 60.86034 * 11 9 7 20 20 H 1.09003 * 109.46290 * 300.90017 * 11 9 7 21 21 H 1.00895 * 111.00020 * 297.64567 * 12 11 9 22 22 H 1.09009 * 109.46169 * 58.27021 * 13 12 11 23 23 H 1.08995 * 109.46611 * 178.23876 * 13 12 11 24 24 H 1.09001 * 109.50949 * 179.12117 * 14 13 12 25 25 H 1.09005 * 109.50313 * 299.19974 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6256 -2.5589 -0.8901 11 6 0.3704 -2.5808 1.2495 12 7 -0.3481 -3.8614 1.2606 13 6 0.5855 -4.9936 1.3138 14 6 1.4725 -4.9841 0.0669 15 6 2.2453 -3.6636 0.0061 16 1 2.8456 -3.6342 -0.9031 17 9 3.0811 -3.5593 1.1231 18 1 -0.4850 0.8400 -0.0004 19 1 -0.3482 -1.7611 1.2414 20 1 0.9950 -2.5070 2.1397 21 1 -0.9638 -3.9375 0.4649 22 1 1.2092 -4.9085 2.2038 23 1 0.0232 -5.9265 1.3525 24 1 2.1759 -5.8155 0.1141 25 1 0.8507 -5.0837 -0.8229 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259899228.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:52 Heat of formation + Delta-G solvation = -84.381484 kcal Electronic energy + Delta-G solvation = -10643.883471 eV Core-core repulsion = 8570.033901 eV Total energy + Delta-G solvation = -2073.849570 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 173.091 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.38796 -38.90848 -35.08741 -32.03821 -31.46102 -26.91738 -24.28789 -23.26846 -20.90659 -18.53577 -17.32341 -16.85065 -16.50775 -15.95278 -15.08737 -14.93045 -14.68954 -13.85724 -13.54981 -13.16314 -12.83906 -12.58627 -12.26700 -12.15224 -12.07968 -11.67141 -11.36357 -10.85699 -10.50260 -9.11205 -8.16888 -6.28887 1.38698 1.40720 1.51003 2.39601 3.10461 3.61002 3.82666 3.99713 4.04218 4.28753 4.56163 4.68979 4.74896 4.86339 4.96261 5.20102 5.26291 5.47015 5.74949 5.83859 6.07127 6.39403 6.64565 6.81485 7.37640 8.88163 Molecular weight = 173.09amu Principal moments of inertia in cm(-1) A = 0.068311 B = 0.016535 C = 0.014419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.790123 B = 1693.002799 C = 1941.419804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.018 3.982 3 Si 0.956 3.044 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.046 0.954 9 C -0.008 4.008 10 H 0.022 0.978 11 C 0.076 3.924 12 N -0.694 5.694 13 C 0.058 3.942 14 C -0.172 4.172 15 C 0.089 3.911 16 H 0.069 0.931 17 F -0.230 7.230 18 H 0.264 0.736 19 H 0.078 0.922 20 H 0.029 0.971 21 H 0.339 0.661 22 H 0.056 0.944 23 H 0.101 0.899 24 H 0.090 0.910 25 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.088 -7.043 -0.527 7.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.181 4.181 3 Si 0.781 3.219 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.199 1.199 7 C -0.576 4.576 8 H 0.065 0.935 9 C -0.028 4.028 10 H 0.040 0.960 11 C -0.054 4.054 12 N -0.322 5.322 13 C -0.072 4.072 14 C -0.212 4.212 15 C 0.053 3.947 16 H 0.087 0.913 17 F -0.211 7.211 18 H 0.074 0.926 19 H 0.096 0.904 20 H 0.048 0.952 21 H 0.156 0.844 22 H 0.075 0.925 23 H 0.119 0.881 24 H 0.108 0.892 25 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.835 -6.916 0.208 6.969 hybrid contribution 0.891 1.150 -0.905 1.713 sum 1.726 -5.766 -0.696 6.059 Atomic orbital electron populations 1.69951 1.06903 1.27539 1.50682 1.25677 0.95774 1.02298 0.94371 0.85587 0.78590 0.79320 0.78385 1.19755 1.20470 1.19924 1.21315 0.92802 0.91893 1.51594 0.93545 1.19821 0.94229 0.92767 0.96026 0.95959 1.21824 0.96645 0.90731 0.96153 1.60767 1.21076 1.02482 1.47879 1.22031 0.93996 0.94812 0.96331 1.22812 1.00668 0.96313 1.01377 1.21809 0.90659 0.97325 0.84917 0.91323 1.92672 1.74220 1.97482 1.56746 0.92641 0.90389 0.95238 0.84362 0.92497 0.88089 0.89152 0.89407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.83 11.33 21.45 0.24 -51.59 15 2 C 0.02 1.02 5.30 84.65 0.45 1.47 15 3 Si 0.96 43.98 29.54 68.60 2.03 46.01 15 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 15 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 6 H -0.27 -12.57 7.11 99.48 0.71 -11.86 15 7 C -0.54 -30.14 8.27 25.60 0.21 -29.93 15 8 H 0.05 2.64 7.70 -2.91 -0.02 2.62 15 9 C -0.01 -0.40 2.11 -11.49 -0.02 -0.43 15 10 H 0.02 1.17 8.14 -2.39 -0.02 1.15 15 11 C 0.08 3.71 5.49 86.33 0.47 4.19 15 12 N -0.69 -27.25 6.87 -514.00 -3.53 -30.78 15 13 C 0.06 1.91 6.44 86.32 0.56 2.46 15 14 C -0.17 -5.52 5.86 30.65 0.18 -5.34 15 15 C 0.09 3.75 3.53 30.68 0.11 3.86 15 16 H 0.07 2.77 8.14 -2.39 -0.02 2.75 15 17 F -0.23 -10.61 15.87 44.97 0.71 -9.90 15 18 H 0.26 14.28 8.31 -92.71 -0.77 13.51 15 19 H 0.08 4.27 6.10 -2.38 -0.01 4.26 15 20 H 0.03 1.53 7.88 -2.39 -0.02 1.51 15 21 H 0.34 12.41 8.86 -89.70 -0.79 11.62 15 22 H 0.06 2.03 7.88 -2.38 -0.02 2.01 15 23 H 0.10 2.60 8.14 -2.39 -0.02 2.58 15 24 H 0.09 2.43 8.14 -2.39 -0.02 2.41 15 25 H 0.09 2.55 8.14 -2.38 -0.02 2.53 15 Total: -1.00 -59.87 209.35 1.79 -58.08 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.38 Total: 11.91 kcal Atomic # 6 Polarization: -25.68 SS G_CDS: 1.95 Total: -23.73 kcal Atomic # 7 Polarization: -79.08 SS G_CDS: -3.29 Total: -82.37 kcal Atomic # 9 Polarization: -10.61 SS G_CDS: 0.71 Total: -9.90 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -59.87 1.79 -58.08 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259899228.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.306 kcal (2) G-P(sol) polarization free energy of solvation -59.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds