Wall clock time and date at job start Mon Mar 30 2020 02:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00133 * 2 1 4 4 H 1.48502 * 109.47001 * 239.99855 * 3 2 1 5 5 H 1.48496 * 109.47114 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47298 * 119.99988 * 3 2 1 7 7 C 1.37881 * 119.99581 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99340 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99982 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.81565 * 303.65978 * 9 7 2 11 11 C 1.54552 * 110.91796 * 180.02562 * 9 7 2 12 12 C 1.51246 * 104.30163 * 216.49258 * 11 9 7 13 13 C 1.34661 * 143.09536 * 196.69533 * 12 11 9 14 14 N 1.34118 * 107.95183 * 179.75975 * 13 12 11 15 15 C 1.30446 * 109.25246 * 0.02562 * 14 13 12 16 16 N 1.35341 * 108.72580 * 0.07834 * 15 14 13 17 17 C 1.46966 * 142.23271 * 179.53454 * 16 15 14 18 18 H 0.97000 * 119.99824 * 0.02562 * 1 2 3 19 19 H 1.08998 * 110.46986 * 97.78352 * 11 9 7 20 20 H 1.09002 * 110.46451 * 335.19439 * 11 9 7 21 21 H 1.08001 * 126.02219 * 359.76775 * 13 12 11 22 22 H 1.07998 * 125.63512 * 180.12584 * 15 14 13 23 23 H 1.09004 * 110.20964 * 282.19096 * 17 16 15 24 24 H 1.09006 * 110.20892 * 44.08968 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.5679 -2.5520 0.8483 11 6 2.2252 -3.6989 0.0018 12 6 1.5467 -4.7321 -0.8699 13 6 1.5487 -6.0403 -1.1893 14 7 0.5902 -6.2437 -2.1050 15 6 -0.0040 -5.1117 -2.3644 16 7 0.5657 -4.1400 -1.6141 17 6 0.4983 -2.6989 -1.3336 18 1 -0.4850 0.8401 -0.0004 19 1 2.3573 -4.0816 1.0138 20 1 3.1854 -3.4106 -0.4260 21 1 2.2063 -6.7930 -0.7801 22 1 -0.8168 -4.9731 -3.0620 23 1 0.9834 -2.1368 -2.1317 24 1 -0.5400 -2.3841 -1.2278 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259901925.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:57 Heat of formation + Delta-G solvation = 42.607804 kcal Electronic energy + Delta-G solvation = -10233.123910 eV Core-core repulsion = 8339.668271 eV Total energy + Delta-G solvation = -1893.455639 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.19917 -37.59361 -34.48315 -32.24973 -30.18494 -27.29417 -26.76914 -22.25343 -21.93923 -20.86434 -18.61704 -17.51357 -16.67921 -16.49165 -15.07585 -14.64192 -14.30393 -14.08187 -13.78951 -13.57884 -12.89250 -12.79359 -12.65687 -12.25226 -11.66397 -11.31538 -10.87643 -10.64262 -10.27665 -9.18930 -8.25235 -6.36796 1.25169 1.45536 1.46421 1.54013 2.09807 2.20747 2.40334 3.08352 3.70749 3.90961 4.00703 4.35199 4.45269 4.53713 4.81120 4.86139 5.10812 5.24789 5.52648 5.53826 5.72333 5.87401 6.13669 6.47929 6.72799 7.14128 7.33942 8.84529 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.095326 B = 0.011658 C = 0.010910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 293.658656 B = 2401.272460 C = 2565.761654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.020 3.980 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.532 4.532 8 H 0.069 0.931 9 C 0.042 3.958 10 H 0.023 0.977 11 C -0.043 4.043 12 C -0.049 4.049 13 C -0.042 4.042 14 N -0.517 5.517 15 C 0.176 3.824 16 N -0.480 5.480 17 C 0.129 3.871 18 H 0.267 0.733 19 H 0.086 0.914 20 H 0.082 0.918 21 H 0.187 0.813 22 H 0.227 0.773 23 H 0.069 0.931 24 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.170 -3.330 -1.658 4.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.181 4.181 3 Si 0.786 3.214 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.570 4.570 8 H 0.087 0.913 9 C 0.023 3.977 10 H 0.041 0.959 11 C -0.081 4.081 12 C -0.166 4.166 13 C -0.189 4.189 14 N -0.236 5.236 15 C -0.104 4.104 16 N -0.163 5.163 17 C 0.008 3.992 18 H 0.075 0.925 19 H 0.104 0.896 20 H 0.101 0.899 21 H 0.204 0.796 22 H 0.244 0.756 23 H 0.087 0.913 24 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.635 -3.801 -2.140 4.658 hybrid contribution 0.175 1.719 0.284 1.751 sum 1.811 -2.082 -1.855 3.325 Atomic orbital electron populations 1.70026 1.07351 1.28173 1.50050 1.25795 0.95660 1.02714 0.93887 0.85552 0.78312 0.78444 0.79081 1.19476 1.21197 1.19372 1.21298 0.93494 0.90221 1.52020 0.91263 1.19691 0.93216 0.93454 0.91348 0.95894 1.20787 0.98408 0.91050 0.97901 1.23167 0.96941 0.95321 1.01162 1.21811 1.02218 0.93467 1.01399 1.70313 1.10590 1.25246 1.17493 1.25157 1.02668 0.81832 1.00760 1.47409 1.27317 1.10527 1.31061 1.22721 1.02092 0.73768 1.00603 0.92451 0.89559 0.89932 0.79573 0.75631 0.91298 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.07 12.80 21.45 0.27 -48.79 14 2 C 0.02 1.01 5.37 84.65 0.45 1.47 14 3 Si 0.96 40.18 29.54 68.60 2.03 42.20 14 4 H -0.27 -10.98 7.11 99.48 0.71 -10.28 14 5 H -0.29 -11.91 7.11 99.48 0.71 -11.21 14 6 H -0.27 -10.95 7.11 99.48 0.71 -10.24 14 7 C -0.53 -26.62 8.38 25.60 0.21 -26.40 14 8 H 0.07 3.34 7.61 -2.91 -0.02 3.32 14 9 C 0.04 1.98 2.96 -10.51 -0.03 1.95 14 10 H 0.02 1.18 8.14 -2.39 -0.02 1.16 14 11 C -0.04 -1.70 6.38 30.55 0.20 -1.51 14 12 C -0.05 -1.93 7.51 41.16 0.31 -1.62 14 13 C -0.04 -1.55 11.87 83.52 0.99 -0.56 14 14 N -0.52 -19.92 11.25 -200.14 -2.25 -22.17 14 15 C 0.18 6.44 13.05 180.18 2.35 8.79 14 16 N -0.48 -19.55 3.61 -510.06 -1.84 -21.40 14 17 C 0.13 5.74 6.70 86.79 0.58 6.32 14 18 H 0.27 13.63 8.31 -92.71 -0.77 12.86 14 19 H 0.09 3.08 8.14 -2.39 -0.02 3.06 14 20 H 0.08 3.16 7.76 -2.39 -0.02 3.14 14 21 H 0.19 5.64 8.06 -2.91 -0.02 5.61 14 22 H 0.23 6.33 8.06 -2.91 -0.02 6.31 14 23 H 0.07 3.16 7.89 -2.38 -0.02 3.14 14 24 H 0.07 3.16 8.11 -2.38 -0.02 3.15 14 Total: -1.00 -56.16 212.81 4.46 -51.70 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 1.19 Total: 10.02 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: 5.07 Total: -11.57 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -3.82 Total: -92.35 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.20 kcal Total: -56.16 4.46 -51.70 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259901925.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.309 kcal (2) G-P(sol) polarization free energy of solvation -56.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds