Wall clock time and date at job start Mon Mar 30 2020 02:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 120.00079 * 2 1 4 4 H 1.48506 * 109.46905 * 85.27614 * 3 2 1 5 5 H 1.48498 * 109.47185 * 205.27605 * 3 2 1 6 6 H 1.48506 * 109.47032 * 325.28037 * 3 2 1 7 7 C 1.37880 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99886 * 173.83848 * 7 2 1 9 9 C 1.50694 * 119.99930 * 353.84374 * 7 2 1 10 10 H 1.08991 * 110.82310 * 52.31442 * 9 7 2 11 11 C 1.54556 * 110.92146 * 175.97624 * 9 7 2 12 12 C 1.51242 * 104.30277 * 143.50658 * 11 9 7 13 13 C 1.34667 * 143.09434 * 163.46531 * 12 11 9 14 14 N 1.34113 * 107.94619 * 180.14936 * 13 12 11 15 15 C 1.30442 * 109.26089 * 359.93532 * 14 13 12 16 16 N 1.35343 * 108.72395 * 359.92447 * 15 14 13 17 17 C 1.46962 * 142.23438 * 180.33588 * 16 15 14 18 18 H 0.97001 * 119.99880 * 359.97438 * 1 2 3 19 19 H 1.09001 * 110.46625 * 262.21460 * 11 9 7 20 20 H 1.09002 * 110.46507 * 24.67650 * 11 9 7 21 21 H 1.08005 * 126.02180 * 0.16751 * 13 12 11 22 22 H 1.07998 * 125.64374 * 179.97438 * 15 14 13 23 23 H 1.09006 * 110.20630 * 77.97096 * 17 16 15 24 24 H 1.08994 * 110.21218 * 316.07253 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3968 2.1040 1.3954 5 1 3.5931 1.4133 -0.5978 6 1 1.5001 2.6218 -0.7975 7 6 2.0046 -1.1941 -0.0005 8 1 3.0799 -1.1968 -0.1009 9 6 1.2576 -2.4954 0.1388 10 1 0.4529 -2.5606 -0.5934 11 6 2.2181 -3.6995 0.0116 12 6 1.6787 -4.7134 0.9958 13 6 1.7288 -6.0151 1.3371 14 7 0.9206 -6.1972 2.3917 15 6 0.3739 -5.0584 2.7165 16 7 0.8235 -4.1033 1.8696 17 6 0.7139 -2.6680 1.5733 18 1 -0.4850 0.8401 0.0004 19 1 2.1936 -4.1012 -1.0014 20 1 3.2332 -3.4073 0.2804 21 1 2.3165 -6.7779 0.8478 22 1 -0.3219 -4.9029 3.5278 23 1 1.3157 -2.0915 2.2759 24 1 -0.3282 -2.3521 1.6215 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259901927.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:59 Heat of formation + Delta-G solvation = 42.643486 kcal Electronic energy + Delta-G solvation = -10223.226578 eV Core-core repulsion = 8329.772486 eV Total energy + Delta-G solvation = -1893.454092 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 178.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.20407 -37.59312 -34.49911 -32.24824 -30.20711 -27.30605 -26.76907 -22.25133 -21.94891 -20.87061 -18.64164 -17.52240 -16.67547 -16.50889 -15.06443 -14.65190 -14.31436 -14.08365 -13.79964 -13.58930 -12.94192 -12.75150 -12.65736 -12.23777 -11.69379 -11.32130 -10.84328 -10.67167 -10.27762 -9.19184 -8.25807 -6.36741 1.24614 1.42921 1.46275 1.55718 2.08454 2.20544 2.39954 3.07000 3.70739 3.90637 4.00228 4.33816 4.43749 4.53066 4.79306 4.84810 5.10454 5.24004 5.51836 5.55732 5.71735 5.86707 6.13998 6.47375 6.73796 7.13810 7.33708 8.84245 Molecular weight = 178.08amu Principal moments of inertia in cm(-1) A = 0.093674 B = 0.011582 C = 0.010959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 298.837257 B = 2416.890351 C = 2554.359363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.021 3.979 3 Si 0.959 3.041 4 H -0.276 1.276 5 H -0.264 1.264 6 H -0.285 1.285 7 C -0.531 4.531 8 H 0.069 0.931 9 C 0.041 3.959 10 H 0.025 0.975 11 C -0.043 4.043 12 C -0.048 4.048 13 C -0.042 4.042 14 N -0.517 5.517 15 C 0.177 3.823 16 N -0.479 5.479 17 C 0.124 3.876 18 H 0.266 0.734 19 H 0.084 0.916 20 H 0.083 0.917 21 H 0.187 0.813 22 H 0.228 0.772 23 H 0.072 0.928 24 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.433 -3.308 2.056 4.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.180 4.180 3 Si 0.785 3.215 4 H -0.201 1.201 5 H -0.189 1.189 6 H -0.211 1.211 7 C -0.569 4.569 8 H 0.087 0.913 9 C 0.022 3.978 10 H 0.043 0.957 11 C -0.082 4.082 12 C -0.165 4.165 13 C -0.189 4.189 14 N -0.236 5.236 15 C -0.103 4.103 16 N -0.163 5.163 17 C 0.003 3.997 18 H 0.075 0.925 19 H 0.103 0.897 20 H 0.101 0.899 21 H 0.204 0.796 22 H 0.244 0.756 23 H 0.090 0.910 24 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.981 -3.773 2.596 4.990 hybrid contribution 0.118 1.712 -0.307 1.743 sum 2.100 -2.061 2.289 3.727 Atomic orbital electron populations 1.70056 1.07418 1.28092 1.49981 1.25795 0.95587 1.02725 0.93859 0.85512 0.78931 0.78926 0.78174 1.20116 1.18851 1.21106 1.21313 0.93933 0.90380 1.51243 0.91317 1.19674 0.94326 0.93448 0.90365 0.95681 1.20783 0.99506 0.91358 0.96520 1.23156 1.00046 0.95199 0.98114 1.21810 1.04754 0.93767 0.98561 1.70307 1.13074 1.24781 1.15475 1.25170 1.03873 0.82155 0.99143 1.47363 1.33851 1.10650 1.24392 1.22777 1.01703 0.74393 1.00818 0.92458 0.89711 0.89917 0.79602 0.75557 0.90952 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.28 13.14 21.45 0.28 -49.00 14 2 C 0.02 1.07 5.37 84.65 0.45 1.52 14 3 Si 0.96 40.17 29.54 68.60 2.03 42.19 14 4 H -0.28 -11.31 7.11 99.48 0.71 -10.61 14 5 H -0.26 -10.70 7.11 99.48 0.71 -9.99 14 6 H -0.29 -11.91 7.11 99.48 0.71 -11.20 14 7 C -0.53 -26.53 8.35 25.60 0.21 -26.31 14 8 H 0.07 3.33 7.59 -2.91 -0.02 3.31 14 9 C 0.04 1.93 2.87 -10.55 -0.03 1.90 14 10 H 0.02 1.30 8.10 -2.39 -0.02 1.28 14 11 C -0.04 -1.71 6.39 30.55 0.20 -1.52 14 12 C -0.05 -1.89 7.51 41.16 0.31 -1.59 14 13 C -0.04 -1.55 11.87 83.53 0.99 -0.56 14 14 N -0.52 -19.79 11.25 -200.13 -2.25 -22.04 14 15 C 0.18 6.39 13.05 180.18 2.35 8.74 14 16 N -0.48 -19.31 3.61 -510.28 -1.84 -21.16 14 17 C 0.12 5.44 7.11 86.76 0.62 6.05 14 18 H 0.27 13.62 8.31 -92.71 -0.77 12.85 14 19 H 0.08 3.06 8.14 -2.39 -0.02 3.04 14 20 H 0.08 3.16 7.74 -2.39 -0.02 3.15 14 21 H 0.19 5.62 8.06 -2.91 -0.02 5.59 14 22 H 0.23 6.23 8.06 -2.91 -0.02 6.21 14 23 H 0.07 3.22 7.88 -2.38 -0.02 3.20 14 24 H 0.07 3.04 8.14 -2.39 -0.02 3.02 14 Total: -1.00 -56.42 213.39 4.50 -51.92 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: 1.19 Total: 9.85 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: 5.10 Total: -11.76 kcal Atomic # 7 Polarization: -88.38 SS G_CDS: -3.81 Total: -92.19 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.19 kcal Total: -56.42 4.50 -51.92 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259901927.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.563 kcal (2) G-P(sol) polarization free energy of solvation -56.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds