Wall clock time and date at job start Mon Mar 30 2020 02:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31359 * 1 3 3 Si 1.86804 * 120.00012 * 2 1 4 4 H 1.48497 * 109.47131 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47313 * 120.00201 * 3 2 1 6 6 H 1.48505 * 109.47304 * 240.00113 * 3 2 1 7 7 C 1.38912 * 120.00382 * 179.72581 * 2 1 3 8 8 H 1.08003 * 119.99849 * 356.36580 * 7 2 1 9 9 N 1.37217 * 120.00411 * 176.36393 * 7 2 1 10 10 N 1.40034 * 125.89162 * 5.94344 * 9 7 2 11 11 C 1.30649 * 109.14230 * 179.84810 * 10 9 7 12 12 C 1.41095 * 108.42504 * 0.40757 * 11 10 9 13 13 C 1.46748 * 146.86171 * 179.74105 * 12 11 10 14 14 C 1.34108 * 106.12097 * 180.02562 * 13 12 11 15 15 O 1.34434 * 109.66527 * 0.02562 * 14 13 12 16 16 C 1.34414 * 110.92609 * 359.97438 * 15 14 13 17 17 H 0.96998 * 119.99780 * 175.71362 * 1 2 3 18 18 H 1.07998 * 125.78565 * 180.13544 * 11 10 9 19 19 H 1.08001 * 126.93533 * 0.02562 * 13 12 11 20 20 H 1.08008 * 125.16515 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 1.2826 2.7465 0.0006 5 1 3.1014 1.6965 1.2125 6 1 3.1014 1.6965 -1.2125 7 6 2.0082 -1.2030 0.0058 8 1 1.4699 -2.1371 0.0695 9 7 3.3783 -1.2045 -0.0696 10 7 4.2035 -0.0736 -0.0386 11 6 5.4511 -0.4509 -0.1293 12 6 5.4851 -1.8576 -0.2333 13 6 6.3155 -3.0601 -0.3665 14 6 5.4663 -4.0977 -0.3955 15 8 4.2024 -3.6509 -0.2942 16 6 4.1735 -2.3107 -0.1948 17 1 -0.4850 -0.8377 -0.0628 18 1 6.3103 0.2034 -0.1295 19 1 7.3929 -3.1012 -0.4286 20 1 5.7541 -5.1347 -0.4872 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259916846.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:11 Heat of formation + Delta-G solvation = 70.706265 kcal Electronic energy + Delta-G solvation = -10109.914937 eV Core-core repulsion = 8081.844644 eV Total energy + Delta-G solvation = -2028.070293 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 178.048 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.43195 -40.48494 -35.84107 -33.49834 -32.01008 -29.70850 -26.52869 -23.67065 -22.35947 -21.53190 -20.09814 -18.18178 -17.47645 -17.37131 -15.91173 -15.58473 -14.92344 -14.61907 -14.60961 -13.63111 -12.74925 -12.70329 -12.63158 -12.01249 -11.83865 -10.88945 -10.66654 -9.91956 -9.45213 -9.11570 -6.59065 0.90046 0.91857 1.08917 1.48767 1.66013 1.92845 2.21842 2.30032 2.76531 2.81905 3.83402 3.93692 4.38655 4.62765 4.82284 5.02628 5.14971 5.49482 5.66801 5.89904 6.06836 6.37667 6.86156 7.08447 8.02427 Molecular weight = 178.05amu Principal moments of inertia in cm(-1) A = 0.071000 B = 0.017283 C = 0.013978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.271837 B = 1619.725032 C = 2002.725234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.005 3.995 3 Si 1.160 2.840 4 H -0.304 1.304 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.414 4.414 8 H 0.089 0.911 9 N -0.180 5.180 10 N -0.339 5.339 11 C 0.054 3.946 12 C -0.296 4.296 13 C -0.153 4.153 14 C -0.040 4.040 15 O -0.217 6.217 16 C 0.104 3.896 17 H 0.274 0.726 18 H 0.225 0.775 19 H 0.191 0.809 20 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.877 -3.854 -0.839 12.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.203 4.203 3 Si 0.987 3.013 4 H -0.234 1.234 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.543 4.543 8 H 0.107 0.893 9 N 0.042 4.958 10 N -0.169 5.169 11 C -0.124 4.124 12 C -0.308 4.308 13 C -0.174 4.174 14 C -0.103 4.103 15 O -0.116 6.116 16 C -0.070 4.070 17 H 0.085 0.915 18 H 0.241 0.759 19 H 0.208 0.792 20 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 10.510 -1.532 -0.667 10.642 hybrid contribution -0.036 -2.738 -0.068 2.739 sum 10.474 -4.270 -0.734 11.334 Atomic orbital electron populations 1.70949 1.06509 1.31190 1.40475 1.27871 0.96002 1.05810 0.90626 0.82083 0.70989 0.68732 0.79452 1.23386 1.20321 1.20386 1.21030 0.77654 0.97874 1.57755 0.89325 1.44317 1.04680 0.98659 1.48139 1.76006 1.02908 1.05633 1.32364 1.23391 0.94345 0.93040 1.01580 1.20717 0.92379 0.95401 1.22303 1.22163 1.00778 0.87772 1.06652 1.24803 0.77545 1.01332 1.06647 1.83572 1.33137 1.16116 1.78747 1.19727 0.92586 0.82930 1.11733 0.91533 0.75888 0.79155 0.72901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -50.80 13.69 21.65 0.30 -50.50 14 2 C 0.00 0.29 5.50 84.92 0.47 0.75 14 3 Si 1.16 57.52 25.64 68.60 1.76 59.27 14 4 H -0.30 -14.43 7.11 99.48 0.71 -13.73 14 5 H -0.28 -13.37 7.00 99.48 0.70 -12.67 14 6 H -0.28 -13.41 6.93 99.48 0.69 -12.73 14 7 C -0.41 -24.86 10.58 84.01 0.89 -23.97 14 8 H 0.09 5.51 8.05 -2.91 -0.02 5.49 14 9 N -0.18 -10.08 3.70 -300.55 -1.11 -11.19 14 10 N -0.34 -17.21 7.05 -56.30 -0.40 -17.60 14 11 C 0.05 2.24 12.06 85.57 1.03 3.27 14 12 C -0.30 -12.51 7.24 -20.21 -0.15 -12.66 14 13 C -0.15 -4.74 11.15 23.55 0.26 -4.48 14 14 C -0.04 -1.21 12.00 66.88 0.80 -0.41 14 15 O -0.22 -9.60 10.56 -4.85 -0.05 -9.65 14 16 C 0.10 5.26 8.87 84.05 0.75 6.01 14 17 H 0.27 15.80 8.73 -92.71 -0.81 14.99 14 18 H 0.22 6.62 8.06 -2.91 -0.02 6.60 14 19 H 0.19 3.97 8.06 -2.91 -0.02 3.94 14 20 H 0.26 4.40 8.06 -2.91 -0.02 4.38 14 Total: -1.00 -70.63 190.03 5.74 -64.89 By element: Atomic # 1 Polarization: -4.92 SS G_CDS: 1.19 Total: -3.73 kcal Atomic # 6 Polarization: -35.53 SS G_CDS: 4.05 Total: -31.48 kcal Atomic # 7 Polarization: -78.09 SS G_CDS: -1.21 Total: -79.30 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.05 Total: -9.65 kcal Atomic # 14 Polarization: 57.52 SS G_CDS: 1.76 Total: 59.27 kcal Total: -70.63 5.74 -64.89 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259916846.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.595 kcal (2) G-P(sol) polarization free energy of solvation -70.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds