Wall clock time and date at job start Mon Mar 30 2020 01:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99655 * 2 1 4 4 H 1.48504 * 109.46944 * 270.00116 * 3 2 1 5 5 H 1.48496 * 109.47253 * 30.00344 * 3 2 1 6 6 H 1.48500 * 109.46952 * 150.00370 * 3 2 1 7 7 C 1.37872 * 120.00336 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99959 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00279 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47455 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.75113 * 302.98530 * 10 9 7 12 12 C 1.54381 * 110.84238 * 66.45382 * 10 9 7 13 13 O 1.43240 * 107.58517 * 139.75144 * 12 10 9 14 14 C 1.43645 * 109.97179 * 1.71070 * 13 12 10 15 15 C 1.54945 * 105.13541 * 335.57081 * 14 13 12 16 16 H 1.09002 * 111.12670 * 154.36193 * 15 14 13 17 17 F 1.39900 * 111.12575 * 278.52538 * 15 14 13 18 18 H 0.97001 * 120.00647 * 359.97438 * 1 2 3 19 19 H 1.09006 * 109.46768 * 60.00299 * 9 7 2 20 20 H 1.08995 * 109.46895 * 300.00323 * 9 7 2 21 21 H 1.09001 * 109.83261 * 20.24221 * 12 10 9 22 22 H 1.08994 * 109.90703 * 259.30283 * 12 10 9 23 23 H 1.09004 * 110.31107 * 94.48835 * 14 13 12 24 24 H 1.09001 * 110.31215 * 216.65663 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 1 3.6276 -3.1854 0.8543 12 6 3.6609 -3.3468 -1.3234 13 8 4.7867 -4.1451 -1.7069 14 6 5.8242 -4.0367 -0.7194 15 6 5.5741 -2.6784 -0.0171 16 1 5.9775 -2.6795 0.9955 17 9 6.0994 -1.6196 -0.7655 18 1 -0.4851 0.8400 0.0004 19 1 3.8752 -0.6803 0.8889 20 1 3.8745 -0.6799 -0.8911 21 1 3.4523 -2.6065 -2.0958 22 1 2.7888 -3.9838 -1.1765 23 1 5.7499 -4.8533 -0.0012 24 1 6.8037 -4.0406 -1.1977 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259936431.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:10 Heat of formation + Delta-G solvation = -107.234118 kcal Electronic energy + Delta-G solvation = -10466.233677 eV Core-core repulsion = 8293.674480 eV Total energy + Delta-G solvation = -2172.559197 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 174.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -47.24563 -38.54716 -33.80346 -31.77522 -29.34993 -27.00578 -23.03236 -21.82514 -19.62294 -17.08148 -16.72403 -15.82490 -14.87797 -14.64751 -14.21879 -13.86737 -13.16702 -12.80909 -12.55294 -11.89073 -11.49378 -10.98929 -10.80409 -10.57603 -10.13080 -9.89757 -9.61258 -9.29932 -9.02838 -8.58346 -6.09436 -4.09002 3.30275 3.37406 3.42197 4.12898 4.42175 4.65169 4.89972 5.12688 5.20358 5.28129 5.57720 5.70780 5.79292 6.20583 6.37730 6.44602 6.70985 7.10191 7.27550 7.34222 7.69723 8.44752 8.93123 9.52461 11.03389 Molecular weight = 174.08amu Principal moments of inertia in cm(-1) A = 0.066009 B = 0.014652 C = 0.012750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.084933 B = 1910.486020 C = 2195.526428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.070 3.930 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.074 0.926 9 C -0.003 4.003 10 C -0.125 4.125 11 H 0.093 0.907 12 C 0.061 3.939 13 O -0.390 6.390 14 C 0.031 3.969 15 C 0.048 3.952 16 H 0.098 0.902 17 F -0.201 7.201 18 H 0.264 0.736 19 H 0.021 0.979 20 H 0.023 0.977 21 H 0.080 0.920 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.125 -4.818 0.651 11.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.092 0.908 9 C -0.041 4.041 10 C -0.144 4.144 11 H 0.111 0.889 12 C -0.014 4.014 13 O -0.310 6.310 14 C -0.046 4.046 15 C 0.012 3.988 16 H 0.116 0.884 17 F -0.182 7.182 18 H 0.074 0.926 19 H 0.039 0.961 20 H 0.042 0.958 21 H 0.098 0.902 22 H 0.089 0.911 23 H 0.090 0.910 24 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.977 -4.794 0.444 11.078 hybrid contribution 0.307 1.111 0.215 1.173 sum 10.284 -3.683 0.659 10.943 Atomic orbital electron populations 1.69905 1.06284 1.27029 1.50671 1.24991 0.94716 0.99168 0.94307 0.86798 0.80352 0.83584 0.78750 1.20117 1.21331 1.18949 1.21049 0.88968 0.94636 1.51572 0.90808 1.19516 0.97458 0.89758 0.97343 1.23225 0.90978 1.01610 0.98598 0.88905 1.23258 0.87795 0.93656 0.96718 1.88368 1.26751 1.69867 1.45975 1.23892 0.92864 0.95701 0.92149 1.23334 0.96363 0.84497 0.94646 0.88417 1.92791 1.87642 1.58822 1.78901 0.92624 0.96051 0.95840 0.90176 0.91073 0.90990 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 13.96 55.43 0.77 -26.71 14 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 14 3 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 14 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 14 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 14 6 H -0.26 -6.37 6.54 56.52 0.37 -6.00 14 7 C -0.52 -14.62 9.24 -34.44 -0.32 -14.94 14 8 H 0.07 2.18 7.94 -52.48 -0.42 1.76 14 9 C 0.00 -0.08 3.10 -27.88 -0.09 -0.17 14 10 C -0.13 -2.44 2.93 -88.67 -0.26 -2.70 14 11 H 0.09 1.70 8.14 -51.93 -0.42 1.28 14 12 C 0.06 1.20 6.92 37.88 0.26 1.46 14 13 O -0.39 -7.13 11.36 -35.23 -0.40 -7.53 14 14 C 0.03 0.45 7.59 38.18 0.29 0.74 14 15 C 0.05 0.79 4.65 -24.48 -0.11 0.67 14 16 H 0.10 1.30 8.14 -51.93 -0.42 0.88 14 17 F -0.20 -3.82 16.18 2.25 0.04 -3.79 14 18 H 0.26 7.55 8.31 -40.82 -0.34 7.22 14 19 H 0.02 0.51 7.20 -51.93 -0.37 0.13 14 20 H 0.02 0.58 7.00 -51.93 -0.36 0.21 14 21 H 0.08 1.69 7.77 -51.93 -0.40 1.29 14 22 H 0.07 1.35 8.14 -51.93 -0.42 0.93 14 23 H 0.07 0.87 8.14 -51.93 -0.42 0.44 14 24 H 0.09 1.12 8.14 -51.93 -0.42 0.70 14 LS Contribution 208.53 15.07 3.14 3.14 Total: -1.00 -30.64 208.53 -4.28 -34.92 By element: Atomic # 1 Polarization: -1.34 SS G_CDS: -2.84 Total: -4.18 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -0.32 Total: -13.00 kcal Atomic # 7 Polarization: -27.48 SS G_CDS: 0.77 Total: -26.71 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: -0.40 Total: -7.53 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.04 Total: -3.79 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 3.14 Total: 3.14 kcal Total: -30.64 -4.28 -34.92 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259936431.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.312 kcal (2) G-P(sol) polarization free energy of solvation -30.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds