Wall clock time and date at job start Mon Mar 30 2020 01:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47894 * 110.99963 * 2 1 4 4 C 1.53999 * 107.05962 * 145.84560 * 3 2 1 5 5 H 1.08992 * 110.31121 * 117.68935 * 4 3 2 6 6 F 1.39897 * 110.39116 * 239.81805 * 4 3 2 7 7 C 1.54598 * 105.13530 * 358.77290 * 4 3 2 8 8 H 1.09002 * 110.72461 * 96.58262 * 7 4 3 9 9 C 1.50703 * 110.72446 * 219.68413 * 7 4 3 10 10 H 1.07994 * 119.99603 * 0.02562 * 9 7 4 11 11 C 1.37875 * 119.99838 * 180.02562 * 9 7 4 12 12 N 1.31513 * 120.00380 * 359.97438 * 11 9 7 13 13 Si 1.86798 * 119.99848 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47297 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47261 * 239.99776 * 13 11 9 16 16 H 1.48500 * 109.47454 * 119.99769 * 13 11 9 17 17 C 1.48532 * 111.00125 * 117.39863 * 2 1 3 18 18 H 1.09002 * 109.47009 * 60.12535 * 1 2 3 19 19 H 1.09001 * 109.47426 * 180.12528 * 1 2 3 20 20 H 1.09006 * 109.46880 * 300.12366 * 1 2 3 21 21 H 1.09003 * 109.92290 * 26.49302 * 3 2 1 22 22 H 1.09004 * 109.92116 * 265.19820 * 3 2 1 23 23 H 0.97001 * 119.99667 * 0.02562 * 12 11 9 24 24 H 1.09002 * 110.66558 * 81.83971 * 17 2 1 25 25 H 1.09005 * 110.66538 * 318.71523 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3807 0.0000 4 6 3.2983 1.3659 0.8265 5 1 4.1470 1.6454 0.2024 6 9 3.1919 2.2350 1.9176 7 6 3.4491 -0.0930 1.3154 8 1 4.1140 -0.6533 0.6580 9 6 3.9512 -0.1303 2.7358 10 1 4.1510 0.7913 3.2622 11 6 4.1554 -1.3409 3.3632 12 7 3.9116 -2.4631 2.7224 13 14 4.7770 -1.3871 5.1241 14 1 4.9719 0.0002 5.6169 15 1 6.0701 -2.1157 5.1737 16 1 3.7839 -2.0825 5.9817 17 6 2.0013 -0.6381 1.2311 18 1 -0.3633 0.5119 -0.8911 19 1 -0.3634 -1.0276 0.0022 20 1 -0.3633 0.5158 0.8889 21 1 1.2758 2.0562 0.4571 22 1 2.2122 1.6967 -1.0212 23 1 3.5884 -2.4391 1.8081 24 1 2.0040 -1.7236 1.1314 25 1 1.4237 -0.3323 2.1035 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259965678.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:57 Heat of formation + Delta-G solvation = -52.814547 kcal Electronic energy + Delta-G solvation = -10550.159031 eV Core-core repulsion = 8477.678306 eV Total energy + Delta-G solvation = -2072.480725 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 173.091 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -46.65435 -37.73420 -33.37976 -30.40980 -27.84131 -25.50742 -23.60354 -20.45838 -19.92936 -16.90739 -16.10501 -14.75886 -14.43172 -13.93094 -13.81503 -13.59684 -12.97324 -12.37194 -11.85127 -11.52518 -10.94803 -10.86574 -10.78758 -10.48400 -10.09724 -9.91167 -9.41732 -8.59444 -8.39225 -7.90080 -6.36868 -4.09138 3.45060 3.47900 3.63499 4.48675 4.64333 5.12847 5.28145 5.45174 5.64316 5.77839 5.79526 5.89718 6.13720 6.16958 6.32873 6.55811 6.76624 7.01802 7.22605 7.48265 7.59983 8.16470 8.49039 8.85477 9.62114 11.01574 Molecular weight = 173.09amu Principal moments of inertia in cm(-1) A = 0.058553 B = 0.016556 C = 0.014162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.083802 B = 1690.845421 C = 1976.609202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.529 5.529 3 C 0.013 3.987 4 C 0.084 3.916 5 H 0.074 0.926 6 F -0.210 7.210 7 C 0.013 3.987 8 H 0.044 0.956 9 C -0.594 4.594 10 H 0.063 0.937 11 C 0.021 3.979 12 N -0.913 5.913 13 Si 1.075 2.925 14 H -0.288 1.288 15 H -0.287 1.287 16 H -0.287 1.287 17 C 0.040 3.960 18 H 0.059 0.941 19 H 0.065 0.935 20 H 0.023 0.977 21 H 0.048 0.952 22 H 0.078 0.922 23 H 0.272 0.728 24 H 0.077 0.923 25 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.747 4.952 -3.534 7.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.253 5.253 3 C -0.116 4.116 4 C 0.048 3.952 5 H 0.092 0.908 6 F -0.191 7.191 7 C -0.007 4.007 8 H 0.062 0.938 9 C -0.633 4.633 10 H 0.081 0.919 11 C -0.184 4.184 12 N -0.549 5.549 13 Si 0.903 3.097 14 H -0.214 1.214 15 H -0.213 1.213 16 H -0.214 1.214 17 C -0.088 4.088 18 H 0.078 0.922 19 H 0.084 0.916 20 H 0.042 0.958 21 H 0.066 0.934 22 H 0.096 0.904 23 H 0.084 0.916 24 H 0.096 0.904 25 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.184 3.666 -2.748 5.579 hybrid contribution -0.868 1.522 -0.553 1.837 sum -4.052 5.187 -3.301 7.364 Atomic orbital electron populations 1.22461 0.89137 1.01640 0.99799 1.64843 1.07150 1.13684 1.39618 1.23447 0.96593 0.91390 1.00128 1.22316 0.96478 0.92147 0.84295 0.90782 1.92725 1.97223 1.71386 1.57742 1.20288 0.92673 0.89233 0.98495 0.93753 1.21972 1.48247 0.95738 0.97323 0.91861 1.25839 0.94874 0.92040 1.05606 1.70759 1.42203 1.28393 1.13560 0.83456 0.76619 0.75177 0.74409 1.21430 1.21303 1.21386 1.23646 0.97686 0.99408 0.88018 0.92234 0.91597 0.95826 0.93366 0.90360 0.91639 0.90449 0.94150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.40 60.06 0.56 0.87 15 2 N -0.53 -10.63 5.55 -238.71 -1.33 -11.96 15 3 C 0.01 0.25 6.56 -2.76 -0.02 0.23 15 4 C 0.08 1.85 4.62 -25.37 -0.12 1.73 15 5 H 0.07 1.46 8.14 -51.93 -0.42 1.04 15 6 F -0.21 -4.99 15.38 2.25 0.03 -4.95 15 7 C 0.01 0.32 2.53 -89.91 -0.23 0.09 15 8 H 0.04 1.18 7.91 -51.93 -0.41 0.77 15 9 C -0.59 -16.88 8.22 -34.44 -0.28 -17.16 15 10 H 0.06 1.85 6.69 -52.49 -0.35 1.50 15 11 C 0.02 0.59 5.36 -17.82 -0.10 0.50 15 12 N -0.91 -27.18 13.49 55.43 0.75 -26.44 15 13 Si 1.07 25.50 29.90 -169.99 -5.08 20.41 15 14 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 15 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 16 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15 17 C 0.04 0.94 5.39 -1.90 -0.01 0.93 15 18 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 19 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 20 H 0.02 0.39 8.00 -51.93 -0.42 -0.03 15 21 H 0.05 0.88 7.62 -51.93 -0.40 0.49 15 22 H 0.08 1.27 8.14 -51.93 -0.42 0.85 15 23 H 0.27 7.99 5.56 -40.82 -0.23 7.76 15 24 H 0.08 1.92 6.69 -51.93 -0.35 1.57 15 25 H 0.04 1.01 7.87 -51.93 -0.41 0.61 15 LS Contribution 210.62 15.07 3.17 3.17 Total: -1.00 -30.01 210.62 -5.68 -35.69 By element: Atomic # 1 Polarization: -0.08 SS G_CDS: -3.04 Total: -3.13 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -0.19 Total: -12.81 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: -0.58 Total: -38.39 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.03 Total: -4.95 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.08 Total: 20.41 kcal Total LS contribution 3.17 Total: 3.17 kcal Total: -30.01 -5.68 -35.69 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259965678.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.126 kcal (2) G-P(sol) polarization free energy of solvation -30.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds