Wall clock time and date at job start Mon Mar 30 2020 02:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00047 * 2 1 4 4 H 1.48503 * 109.47167 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47457 * 300.00023 * 3 2 1 6 6 H 1.48503 * 109.47061 * 60.00125 * 3 2 1 7 7 C 1.37878 * 119.99451 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99245 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00696 * 359.97438 * 7 2 1 10 10 H 1.09001 * 110.28319 * 57.87129 * 9 7 2 11 11 C 1.54382 * 110.40701 * 295.69399 * 9 7 2 12 12 N 1.48567 * 104.58913 * 217.20337 * 11 9 7 13 13 C 1.48822 * 104.23754 * 39.51024 * 12 11 9 14 14 C 1.54253 * 110.32690 * 180.02562 * 9 7 2 15 15 F 1.39905 * 110.32379 * 237.89579 * 14 9 7 16 16 F 1.39905 * 110.32276 * 359.97438 * 14 9 7 17 17 H 0.97007 * 119.99967 * 359.97438 * 1 2 3 18 18 H 1.09001 * 110.41402 * 335.97915 * 11 9 7 19 19 H 1.08997 * 110.41253 * 98.42465 * 11 9 7 20 20 H 1.00897 * 110.99897 * 279.92100 * 12 11 9 21 21 H 1.09000 * 110.49204 * 201.75135 * 13 12 11 22 22 H 1.08990 * 110.45320 * 79.22633 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.5908 -2.5544 -0.8661 11 6 0.4390 -2.6520 1.3036 12 7 0.5340 -4.0968 1.6364 13 6 1.9387 -4.4577 1.3028 14 6 2.2358 -3.6865 -0.0005 15 9 2.0093 -4.5056 -1.1119 16 9 3.5558 -3.2229 -0.0011 17 1 -0.4850 0.8401 0.0004 18 1 0.8789 -2.0492 2.0981 19 1 -0.6002 -2.3671 1.1400 20 1 -0.1184 -4.6376 1.0887 21 1 2.0280 -5.5315 1.1381 22 1 2.6132 -4.1367 2.0965 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260170627.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:42 Heat of formation + Delta-G solvation = -124.458374 kcal Electronic energy + Delta-G solvation = -10985.405485 eV Core-core repulsion = 8595.901694 eV Total energy + Delta-G solvation = -2389.503791 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 177.066 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -49.72458 -47.84458 -38.76423 -34.86758 -30.89102 -29.05569 -26.35588 -23.15199 -21.72138 -19.04707 -18.17331 -17.64003 -17.27427 -16.48024 -15.77493 -15.14171 -14.61903 -14.46545 -14.25830 -13.73680 -13.50081 -12.99255 -12.72417 -12.50691 -12.43948 -12.22234 -11.29911 -11.18260 -10.72031 -9.76164 -8.27254 -6.36872 1.39004 1.41295 1.53665 2.36909 2.89658 3.05022 3.16808 3.55372 3.71547 3.97660 4.52525 4.60180 4.71419 4.80293 5.31235 5.33186 5.52335 5.70363 6.08875 6.34836 6.70079 7.31398 8.83481 Molecular weight = 177.07amu Principal moments of inertia in cm(-1) A = 0.057965 B = 0.017416 C = 0.015289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.932426 B = 1607.350060 C = 1830.974848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.021 3.979 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.065 0.935 9 C -0.024 4.024 10 H 0.026 0.974 11 C 0.079 3.921 12 N -0.659 5.659 13 C 0.024 3.976 14 C 0.237 3.763 15 F -0.216 7.216 16 F -0.205 7.205 17 H 0.267 0.733 18 H 0.062 0.938 19 H 0.066 0.934 20 H 0.345 0.655 21 H 0.119 0.881 22 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.988 -5.557 2.168 6.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.180 4.180 3 Si 0.788 3.212 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.198 1.198 7 C -0.582 4.582 8 H 0.083 0.917 9 C -0.044 4.044 10 H 0.044 0.956 11 C -0.050 4.050 12 N -0.285 5.285 13 C -0.107 4.107 14 C 0.199 3.801 15 F -0.197 7.197 16 F -0.186 7.186 17 H 0.076 0.924 18 H 0.081 0.919 19 H 0.085 0.915 20 H 0.160 0.840 21 H 0.137 0.863 22 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.901 -5.405 2.909 6.426 hybrid contribution 0.381 0.998 -1.462 1.811 sum 2.283 -4.406 1.447 5.169 Atomic orbital electron populations 1.70045 1.07086 1.27977 1.49966 1.25722 0.95786 1.02527 0.93936 0.85425 0.78862 0.78992 0.77958 1.19483 1.20455 1.19822 1.21324 0.93677 0.90521 1.52658 0.91724 1.20869 0.93630 0.92534 0.97389 0.95569 1.22739 0.99885 0.87155 0.95270 1.63486 1.03309 1.05018 1.56677 1.23966 0.93210 1.01082 0.92480 1.23289 0.80040 0.90663 0.86136 1.92903 1.94588 1.74523 1.57704 1.92859 1.38998 1.89813 1.96921 0.92421 0.91901 0.91502 0.83962 0.86281 0.87282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.02 12.57 21.45 0.27 -50.75 14 2 C 0.02 1.13 5.34 84.65 0.45 1.58 14 3 Si 0.96 43.25 29.54 68.60 2.03 45.27 14 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 14 5 H -0.28 -12.27 7.11 99.48 0.71 -11.57 14 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 14 7 C -0.54 -30.06 8.16 25.60 0.21 -29.85 14 8 H 0.06 3.64 6.35 -2.91 -0.02 3.62 14 9 C -0.02 -1.18 2.78 -10.65 -0.03 -1.21 14 10 H 0.03 1.44 8.04 -2.39 -0.02 1.42 14 11 C 0.08 3.53 6.19 86.45 0.53 4.07 14 12 N -0.66 -23.44 7.63 -500.29 -3.82 -27.26 14 13 C 0.02 0.81 7.08 86.38 0.61 1.42 14 14 C 0.24 10.21 2.64 31.47 0.08 10.29 14 15 F -0.22 -9.18 17.09 44.97 0.77 -8.41 14 16 F -0.20 -9.45 15.05 44.97 0.68 -8.78 14 17 H 0.27 14.08 8.31 -92.70 -0.77 13.31 14 18 H 0.06 3.02 7.86 -2.39 -0.02 3.00 14 19 H 0.07 3.13 8.04 -2.39 -0.02 3.11 14 20 H 0.34 10.92 8.93 -89.70 -0.80 10.12 14 21 H 0.12 3.21 8.12 -2.39 -0.02 3.19 14 22 H 0.11 3.57 8.12 -2.39 -0.02 3.55 14 Total: -1.00 -58.49 199.14 2.22 -56.27 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 0.44 Total: 7.34 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: 1.86 Total: -13.69 kcal Atomic # 7 Polarization: -74.46 SS G_CDS: -3.55 Total: -78.01 kcal Atomic # 9 Polarization: -18.63 SS G_CDS: 1.45 Total: -17.19 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -58.49 2.22 -56.27 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260170627.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.189 kcal (2) G-P(sol) polarization free energy of solvation -58.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds