Wall clock time and date at job start Mon Mar 30 2020 02:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09001 * 110.28550 * 300.42257 * 9 7 2 11 11 C 1.54375 * 110.32511 * 62.54793 * 9 7 2 12 12 N 1.48561 * 104.59592 * 142.74746 * 11 9 7 13 13 C 1.48554 * 104.21930 * 320.51993 * 12 11 9 14 14 C 1.54255 * 110.32255 * 178.29340 * 9 7 2 15 15 F 1.39906 * 110.32495 * 359.97438 * 14 9 7 16 16 F 1.39905 * 110.32428 * 122.20726 * 14 9 7 17 17 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 18 18 H 1.09004 * 110.41444 * 261.53001 * 11 9 7 19 19 H 1.09007 * 110.41094 * 23.96870 * 11 9 7 20 20 H 1.00897 * 110.99432 * 80.07299 * 12 11 9 21 21 H 1.08999 * 110.41249 * 158.26366 * 13 12 11 22 22 H 1.09005 * 110.41017 * 280.57755 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6098 -2.5694 0.8734 11 6 0.4104 -2.6272 -1.2939 12 7 0.4976 -4.0653 -1.6564 13 6 1.9067 -4.4313 -1.3607 14 6 2.2353 -3.6861 -0.0466 15 9 3.5551 -3.2223 -0.0677 16 9 2.0312 -4.5252 1.0541 17 1 -0.4850 0.8401 -0.0004 18 1 -0.6250 -2.3457 -1.1019 19 1 0.8327 -2.0091 -2.0862 20 1 -0.1426 -4.6166 -1.1049 21 1 1.9980 -5.5082 -1.2191 22 1 2.5628 -4.0975 -2.1646 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260170640.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:43 Heat of formation + Delta-G solvation = -124.386018 kcal Electronic energy + Delta-G solvation = -10987.705875 eV Core-core repulsion = 8598.205221 eV Total energy + Delta-G solvation = -2389.500653 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 177.066 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -49.71650 -47.84911 -38.77663 -34.86929 -30.89493 -29.03434 -26.35646 -23.14649 -21.72507 -19.04028 -18.17260 -17.63402 -17.27903 -16.48215 -15.78235 -15.13997 -14.61819 -14.46660 -14.26065 -13.73505 -13.50082 -12.98818 -12.70361 -12.50084 -12.46097 -12.21202 -11.29822 -11.19260 -10.70898 -9.75951 -8.26912 -6.36679 1.40589 1.41345 1.52334 2.37042 2.88444 3.05256 3.17448 3.55894 3.72096 3.97452 4.52399 4.60592 4.71622 4.80506 5.31891 5.34232 5.52894 5.70394 6.09023 6.35261 6.69812 7.31485 8.83495 Molecular weight = 177.07amu Principal moments of inertia in cm(-1) A = 0.057950 B = 0.017457 C = 0.015299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.057290 B = 1603.518430 C = 1829.766144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.021 3.979 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.273 1.273 7 C -0.545 4.545 8 H 0.064 0.936 9 C -0.024 4.024 10 H 0.025 0.975 11 C 0.080 3.920 12 N -0.659 5.659 13 C 0.025 3.975 14 C 0.236 3.764 15 F -0.204 7.204 16 F -0.215 7.215 17 H 0.267 0.733 18 H 0.067 0.933 19 H 0.062 0.938 20 H 0.344 0.656 21 H 0.118 0.882 22 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.928 -5.507 -2.248 6.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.179 4.179 3 Si 0.788 3.212 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.198 1.198 7 C -0.583 4.583 8 H 0.082 0.918 9 C -0.044 4.044 10 H 0.044 0.956 11 C -0.049 4.049 12 N -0.285 5.285 13 C -0.107 4.107 14 C 0.198 3.802 15 F -0.185 7.185 16 F -0.197 7.197 17 H 0.076 0.924 18 H 0.085 0.915 19 H 0.080 0.920 20 H 0.160 0.840 21 H 0.137 0.863 22 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.821 -5.339 -2.987 6.382 hybrid contribution 0.426 0.969 1.451 1.796 sum 2.247 -4.370 -1.536 5.148 Atomic orbital electron populations 1.70038 1.07072 1.28035 1.49865 1.25717 0.95790 1.02506 0.93917 0.85477 0.78468 0.78675 0.78630 1.19443 1.20496 1.19777 1.21295 0.93666 0.90538 1.52820 0.91753 1.20867 0.93630 0.92557 0.97387 0.95643 1.22721 0.99776 0.87278 0.95119 1.63436 1.03568 1.04860 1.56634 1.23959 0.92909 1.01311 0.92512 1.23321 0.80097 0.90225 0.86523 1.92858 1.39074 1.89744 1.96872 1.92903 1.94935 1.73415 1.58412 0.92412 0.91474 0.91988 0.83963 0.86343 0.87300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.94 12.44 21.45 0.27 -50.67 14 2 C 0.02 1.16 5.33 84.66 0.45 1.61 14 3 Si 0.96 43.22 29.54 68.60 2.03 45.24 14 4 H -0.27 -11.64 7.11 99.48 0.71 -10.94 14 5 H -0.28 -12.20 7.11 99.48 0.71 -11.50 14 6 H -0.27 -12.19 7.11 99.48 0.71 -11.49 14 7 C -0.55 -30.14 8.17 25.60 0.21 -29.93 14 8 H 0.06 3.62 6.35 -2.91 -0.02 3.60 14 9 C -0.02 -1.19 2.81 -10.65 -0.03 -1.22 14 10 H 0.03 1.40 8.04 -2.39 -0.02 1.38 14 11 C 0.08 3.61 6.09 86.45 0.53 4.14 14 12 N -0.66 -23.51 7.62 -500.44 -3.82 -27.32 14 13 C 0.02 0.83 7.07 86.53 0.61 1.45 14 14 C 0.24 10.20 2.66 31.57 0.08 10.28 14 15 F -0.20 -9.43 15.06 44.97 0.68 -8.75 14 16 F -0.22 -9.15 17.10 44.97 0.77 -8.38 14 17 H 0.27 14.11 8.31 -92.70 -0.77 13.34 14 18 H 0.07 3.16 7.98 -2.38 -0.02 3.14 14 19 H 0.06 3.00 7.85 -2.38 -0.02 2.98 14 20 H 0.34 10.93 8.92 -89.70 -0.80 10.13 14 21 H 0.12 3.20 8.12 -2.39 -0.02 3.18 14 22 H 0.11 3.58 8.13 -2.38 -0.02 3.56 14 Total: -1.00 -58.38 198.91 2.21 -56.17 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 0.44 Total: 7.39 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: 1.85 Total: -13.67 kcal Atomic # 7 Polarization: -74.45 SS G_CDS: -3.55 Total: -77.99 kcal Atomic # 9 Polarization: -18.58 SS G_CDS: 1.45 Total: -17.13 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -58.38 2.21 -56.17 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260170640.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.218 kcal (2) G-P(sol) polarization free energy of solvation -58.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds